Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00386 ATGATGAAGCTGCAAACATATGCGGGAATTAGTTTCATTGCAACTATAGTGGTGATCTATCATGCCTTTAACAGTAGAGGCCAGTTCTACCCAGCGTTGGTCTATTTATCAACTTCCAAGATCAATCTAGTGCTTCTTCTCAACATGGGTTTAGTCCTCATGTGCATTTTGTGGCAGCTAACCAAAAAAATATTTCTTGGTTCTCTCCGAGAAGCAGAGGTTGAGAGGCTCAATGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATCTTTCGGCAAGATTTTTCTGTTGCATTCCTTGCTATGGTTACGGCTTTGTTGTTGATCAAAGCTTTGCATTGGTTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCTCATATCCGGATTGTTTCTTTCTTGGGATTTCTCTTTGTTCTAGATAGTCTGTTTTTGTATAATTCGATAGGTTCTCTGATACAGACAAGGAAGGCTTCAGTTTCCCTCTTCTTTTCATTCGAGTATATGATTCTTGCGACAACAGCCGTGTCAACATTTGTGAAATATATTTTCTATGTCAGTGATGTGCTCATGGAGGGACAATGGGAAAAAAAGCCTGTCTATACATTCTACTTGGAGCTTATCCGAGACTTGCTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACATATGGCGTGCCTTTGCACTTGATCCGTGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGTATTGCAGATTACATTCGGTATAGAAAGATTACTTCAAACATGAATGATCGTTTCCCAGATGCAACACCTGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTCCATTGCCTCCGGTCCTGGTTGGAGCGACAACATACTTGTCCCACTTGCAGAGCCCTTGTTGTACCTCCTGAAGGTTCAAGCACAGCAGGAGGTCATCAGGGATTGCAGTCTGATGCTAACCAACAAGGAACAGGAACCACAAGTTCATCTGAACAAGGTTCGGGTGGTACAAGTGCTGCTGGTGATAGTTTGAGTCATCATCAGTCTAGAGTCCAGGCTGCTGCTGCTGCTGCTTCAATATATGAGAAATCTTATGTTTATCCTTTTGGGAACACATTAGCATGGTCTCCTGGATATGCAGTAGTTCAAAGACCTTTGCTCGACTCCAACAATGTAGAACCGATTGGAGAACAAGCTGCCAATGAACAAGCACAATATTTTCCATTTGCAGGCGGCCCTGCAAACCTGTCCTATACTCAAATTCCCCAAAATCTTTTTGTTCCTTTTCAGCCACGAGAGGGCACTGTAAACAATACGGATGGATTGAGCAGTGGTCAAAATATATCAGGCTCACAGCTTGAAGCTCAAGAAAGATTTCTTCAACAACAGATTGAGATCCTACAAGATCAGCTGCAACTTCTCCGTAAACTGAAAGTCGAGGAAAGCTCAATAGCAGGCGAGGCAGACAAGAAAGGGAAAAGCATAGCATCATCGTCGCAGTCATCGTCTTCATCAGTTTCTGATTCTCATCCACCCGGAGAAACCGAAAGGACGTGCGGGATTTTGTTTTGCGTTATGTCGGTGATGTTGCGTTCTTCGTCTTCTCTGTGGATAATTTTGGTGCTCCGGTTTGTTTCGCTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGTATGCATTGAAGTCGAATTTACAAGATCCCAACGGCGTATTGCAGAGTTGGGATCCAACACTTGTTAATCCCTGCACTTGGTTTCATGTCACCTGTGACAGCGCGAATACTGTCACTCGAGTTGATCTTGGAAATGCAAATCTATCTGGCACATTAGTTCCACAACTTGGTCAGCTTCCGAGTTTACAGGAACTCTATAGTAACAATATTAGTGGAGGAATTCCGGAGGAGCTTGGGGATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCACATACCCGTCACACTTGGCCAGCTTGATAATCTTCGTTTCCTGCGTCTTAACAACAACAGCTTGACAGGAACTATTCCAATGTCATTAACCAATGTTAAATCCTTGCAAGTCCTGGATCTTTCATATAATCACCTAATTGGAGATATTCCGATCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTAACAATAATCTAAATGAGTCTGCCTTACGTTCTCCACCATCTCCTTTACCTTCTTCACCAACCCCCACATCAGGTAATTCTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGGTGCTGCTTTACTGTTTGCTGCTCCTGCTGTTGCAGTTGCTCTGTGGCGTCGGAAGAAACCTCAAGATCATTTCTTTGATGTACCTGCTGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTTAAGAGGTTCTCTCTACGTGAACTACAAGTTGCTACAGATAATTTTAGCAACAAAAATATTCTAGGTAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGTCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCCCAGGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATCTTCTCCGCCTGCGTGGATTTTGTATGACACCAACTGAGCGGGTGTTGGTCTATCCATATATGGTTAATGGAAGTGTAGCATCGTGTTTAAGAGAGCGTTCAGAATTACAGCCTCCACTTAATTGGCCGAACCGAAAACGCATTGCTTTGGGATCGGCAAGGGGACTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATAGGGATGTGAAAGCTGCAAACATTTTGCTTGACGAGGAGTTTGAAGCCGTGGTTGGTGATTTTGGGCTGGCTAAACTCATGAACTACAAAGATACTCATGTCACAACTGCAGTAAGAGGAACAATTGGGCATATAGCGCCTGAGTACCTTTCGACTGGAAAGTCTTCTGAGAAGGCTGATGTTTTTGGGTACGGGGTAATGCTCCTCGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTAAAAGACAAGAGGCTTGAAACGCTAGTCGATCCCGATTTTGCGGGAAACTATCCTGACGATGAAGTCGAGCAGCTCATACAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACCGAGCGGCCTAAGATGTCGGAGGTTGTACGGATGCTCGAGGGTGATGGCTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGATCGGTTCCAACAAGAAGTAAGCCGCAATCCCCACCCAAGTACTACTTGGATTCTTGACTCTACTGCTGAAATGCCTCCTGATGAACTGTCTGATTACTATTGA 3507 43.77 MMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVLMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLAMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFLYNSIGSLIQTRKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWEKKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTAGGHQGLQSDANQQGTGTTSSSEQGSGGTSAAGDSLSHHQSRVQAAAAAASIYEKSYVYPFGNTLAWSPGYAVVQRPLLDSNNVEPIGEQAANEQAQYFPFAGGPANLSYTQIPQNLFVPFQPREGTVNNTDGLSSGQNISGSQLEAQERFLQQQIEILQDQLQLLRKLKVEESSIAGEADKKGKSIASSSQSSSSSVSDSHPPGETERTCGILFCVMSVMLRSSSSLWIILVLRFVSLLSANPEGDALYALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSANTVTRVDLGNANLSGTLVPQLGQLPSLQELYSNNISGGIPEELGDLTNLVSLDLYLNNLTGHIPVTLGQLDNLRFLRLNNNSLTGTIPMSLTNVKSLQVLDLSYNHLIGDIPINGSFSLFTPISFANNNLNESALRSPPSPLPSSPTPTSGNSATGAIAGGVAAGAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERVLVYPYMVNGSVASCLRERSELQPPLNWPNRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMNYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKADVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDFAGNYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEDRFQQEVSRNPHPSTTWILDSTAEMPPDELSDYY 1168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1947244 1962104 + CmaCh04G003860.1 Cma04g00386 291467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00386 1168 Coils Coil 483 510 - -
Cma04g00386 1168 Gene3D Transferase(Phosphotransferase) domain 1 922 1139 - -
Cma04g00386 1168 SUPERFAMILY Protein kinase-like (PK-like) 824 1120 IPR011009 -
Cma04g00386 1168 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 565 1159 - -
Cma04g00386 1168 MobiDBLite consensus disorder prediction 1136 1168 - -
Cma04g00386 1168 MobiDBLite consensus disorder prediction 342 380 - -
Cma04g00386 1168 MobiDBLite consensus disorder prediction 526 545 - -
Cma04g00386 1168 ProSitePatterns Serine/Threonine protein kinases active-site signature. 968 980 IPR008271 GO:0004672|GO:0006468
Cma04g00386 1168 Gene3D Ribonuclease Inhibitor 583 761 IPR032675 -
Cma04g00386 1168 PANTHER BNAA08G11770D PROTEIN 565 1159 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cma04g00386 1168 SMART serkin_6 845 1119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00386 1168 MobiDBLite consensus disorder prediction 521 547 - -
Cma04g00386 1168 CDD RING-H2_synoviolin 289 330 - -
Cma04g00386 1168 Pfam Ring finger domain 291 330 IPR001841 -
Cma04g00386 1168 Pfam Leucine rich repeat N-terminal domain 583 623 IPR013210 -
Cma04g00386 1168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 335 IPR013083 -
Cma04g00386 1168 Pfam Protein kinase domain 846 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00386 1168 SUPERFAMILY L domain-like 585 758 - -
Cma04g00386 1168 MobiDBLite consensus disorder prediction 759 778 - -
Cma04g00386 1168 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Cma04g00386 1168 MobiDBLite consensus disorder prediction 340 380 - -
Cma04g00386 1168 ProSiteProfiles Protein kinase domain profile. 845 1132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00386 1168 SMART ring_2 292 329 IPR001841 -
Cma04g00386 1168 Pfam Leucine Rich repeats (2 copies) 697 737 IPR025875 -
Cma04g00386 1168 SUPERFAMILY RING/U-box 272 336 - -
Cma04g00386 1168 ProSitePatterns Protein kinases ATP-binding region signature. 851 873 IPR017441 GO:0005524
Cma04g00386 1168 Gene3D Phosphorylase Kinase; domain 1 814 921 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00386 Cma-Chr4:1947244 Cma09g01190 Cma-Chr9:7646946 0 dispersed
Cma02g01052 Cma-Chr2:6276781 Cma04g00386 Cma-Chr4:1947244 2.10E-23 transposed
Cma16g00247 Cma-Chr16:1147203 Cma04g00386 Cma-Chr4:1947244 0 transposed
Cma16g00245 Cma-Chr16:1140854 Cma04g00386 Cma-Chr4:1947244 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68463 PF00069 Pkinase 1.70E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00386 K13416 - csv:101216389 1046.57