Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00394 ATGAATCGGATTGTGATGTGGAGTTTTGTGAGAGGTCTGACTAATAATAGCCGGAGATTTGGTTCGGTTGCCGGTCTTGGCGGCGGCGGCGGCGGCGGTGGTAGTCTGAGGGTTACTTTGACGGCGATGGCGTCTCCGGGAACGAGGTATCAATCGGTGGCGAATGAGGGGTTTCACTGGCGGAGGATGATGAGCTCGTCGATGGCGGTGGCGGAAGAACAGGGGATGAAGAACGTTGAGAATCAGGGGAAAGAGAAGGAAAAGGAAAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAATGCTCTGGTTTCTAGCTATTGGGGGATTTACAGGCCGAGGATTACCAGGGAAGATGGATCTGAATGGCCATGGAATTGTTTTATGCCGTGGGATACTTACAGTGCGAATTTGTCCATAGATCTTGGAAAGCACCATGAGCCGAAATGTTTTCTTGATAAATTTGCTTATCGTGTTGTGAAGCTTCTTCGTATCCCAACAGATCTGTTCTTCCAAAGGCGCTACGGTTGTCGAGCAGTGATGCTCGAGACGGTGGCAGCCGTCCCGGGGATGGTCGCCGGGATGCTGCTGCACTTGAAATCTCTCAGGAAGTTTCAGCACAGTGGGGGGTGGATCAAGGCCTTGCTTGAAGAAGCAGAGAATGAAAGGATGCATCTAATGACGATGATTGAGCTTGTGCAGCCCAAGTGGTATGAGCGGCTGCTTGTGATCACAGTGCAGGGAGTGTTTTTCAATGCGTTCTTTGTGCTCTACTTGACGTCCCCCAAATTGGCTCATAGAATTGTTGGGTATTTGGAGGAGGAAGCCATCCATTCTTACACTGAGTACTTGAAGGATATCAACGAGGGGAAGATCGAGAACGTGCCCGCTCCTGCCATCGCCATCGACTACTGGCGGTTGCCTAAGGATGCAAGGCTGAAGGATGTCATCACGGTGATTCGGGCCGATGAGGGGCACCACCGCGACGTCAACCATTTCGCTTCTGACATCCATTTTCAAGGAAAGGAACTGAGAGAATCAGCAGCCCCTCTTGGATTCAACAATTTCTCGTGCTCTCTTATGGCGGAGGGTGAATTGGAGAGGGGCGAGACCAATTGTGGCCTTGCTTCCATGGATTCCATCGAATCGCGATGGGTATTTCAGGATGAGGATCAATCGGAGATCGACGACGACGAGGATGAGGAAGACGACGACGAGGATGGAGAGCGGCATCGTCTGGATTTGGAATCTGAGGAAGAAGATAATGTTGAGCAGAAATTGATTCGCACTGGTCCGCGGATTGATTCATTCGATGTCGAAGCCCTTGAGGTCCCTGGTGCGCAGAGAAATGATTACGAGGACTTCAGCGTGGGAAAGAAAATTGGTCTTGCTTTCCAGACCCTTGGGGTTGTATTCGGTGATGTTGGGACAAGCCCTCTATATACCTTCAGTGTCATGTTCAACAAAGTTCCTATTAATGGAGATGAAGATGTTATTGGGGCATTATCTCTAGTTATCTACACCTTAATCTTGATTTCACTAGTCAAGTATGTACTTGTTGTTCTTCTGGCAAATGATGATGGTGAAGGTGGTACTTTTGCTTTGTACTCTTTGATTTGTAGACATGCCAAGGTCAGTCTTCTCCCAAATCAACTTCCTTCAGATACCCGAATATCAAGTTTTAGGTTAAAGGTGCCATCGGCTGAATTGGAAAGATCACTAAAAATAAAGGAAAAACTTGAGGCTTCCTTGACTTTAAAGAAGCTTATTTTGATTCTCGTTCTTGCTGGAACTTCTATGGTAATAGCTGATGGAGTTGTTACACCAGCAATGTCGGTAATGTCAGCTGTTGGTGGACTAAAGATTGCAGTGGAGGCAATCAACCAAGACGAGGCTGTGATGATCTCAGTTGCCTGTCTTATAGTTTTGTTCAGTGTTCAGAAGTATGGCACTAGCAAAGTGGGGCTCGCTGTTGGTCCTGCATTATTCATATGGTTTTGTACTCTTGCAGGCCTTGGGATTTATAACCTTGTCATATATGACCGCAGTGTCTTGAAGGCATTCAATCCCGTTCATATATATTATTTCTTCAAAAGGAACTCTACCAATGCATGGTATTGCCTTGGAGGTTGTATTTTATGTGCTACCGGTTCCGAGGCGATGTTTGCAGATCTTTGCTATTTCCCTGTGCGGTCAATACAGCTTACATTTGTCTTCCTCGTCTTGCCTTGTCTTTTCTTGGGTTATTTGGGTCAAGCTGCCTACCTGATATCAAACCACAATGGAGCTGAGCATGTTTTTTATAATTCCGTTCCCAAAAGTGCCTTCTGGCCAGTTTTTCTCATCGCTAATGTTGCTGCATTAATTGCCAGTAGGGCAATGACTACGGCTACCTTTTCGTGTATAAAACAATCGACAGCACTTGGATGTTTTCCTCGTCTTAAGATCATTCATACATCTAGGAAATTCATGGGGCAGATCTATATCCCGGTGTTGAATTGGTTTTTGTTGGCAGTTTGCCTGGTGGTCATCTGCTCCATATCTAGCATGTATGAGATTGGAAACGCATATGGTATCGCTGAGCTGGGAGTGATGATGATGACAACTATCTTGTTAACCATTGTAATGCTTCTTATATGGCAGATAAATATTATCATCGTGATGGGTTTTGCGATGATCTTTCTTGGGATAGAACTGATATTTTTCTCGTCTGTCTTATGGGGTGTGGGTGATGGAAGTTGGATCATATTGGTCTTCGCAGTGATTATGTTCTTCATTATGTATATCTGGAACTACGGAAGCAAGCTCAAGTATGAAACTGAAGTCAAGCAAAAGCTGTCAATGGATTTAATGCGGGAACTTGGATGCAATCTCGGGACGATCAGAGCTCCTGGCATCGGTTTGGTCTATAATGAACTAGTGAAAGGAATACCTGCAATATTTGGCCATTTTCTGACTACTCTTCCTGCTGTTCATTCAATGATCATATTTGTCTGTATCAAGTATGTACCAGTTCCTGTTGTGCCTCAGAGTGAGAGATTTCTTTTCCGCCGAGTCTGCCCAAAGAGCTATCACATCTTTCGCTGCATTGCCAGGTATGGTTACAAGGATGTCCGAAAAGAAAATCATCAGGCATTTGAGCAGCTCTTAATCGAAAGCCTTGAGAAATTCATCCGTCGAGAAGCACAAGAAAGATCATTAGAGAGTGATGGAGATGACGATACTGATTCCGACGAGATCCACAGGTCACAACTTCTCATAGCTCCCAATGGAAGTGTCTATTCACTTGGCATTCCTCTCCTCGCTGAATTCAACGAGACTAGACCCATAACTGAAATCATCAACGTACCAGAAGAGGTGCAGCCAATTGAATCTCTAGAACCCTCAATCCCAGATGCAGAGCAATCACTTGAGAGAGAGCTTTCCTTTATAAGAAAGGCTAAAGAATCAGGAGTAGTGTACCTTCTCGGTCATGGAGACATTAGAGCAAGAAAGGATTCTTGGTTTATCAAGAAGCTAATGATCAATTACTTCTATGCGTTTTTAAGAAAGAACAGCAGGAGGGGTATTGCCAACTTGAGTGTTCCCCACACCCACCTGATGCAGTTGATTTTCTATGGCCATCTGGATTCAGAGGAAGCTCTGTTACACCCTACTCGGAAGGCTTTTCGAGAAGCCCAGTTCGTGTATGCCGTAAACTATTATGGAAGAGACAATCTGAACATAACACAGCTGAAAAGGTTCAGTAGGCAACTATGGGCGCAGCAAACTATATGGAACGCCTTCATCTACGAACTATGTATTGAGACTTTCTGGTTCATAAATAGCTCTCTGTTAGCAAACTCCATGCTATGCCCATGGCTCATCCATGCTGAGGGACCAGATACATAG 3894 45.27 MNRIVMWSFVRGLTNNSRRFGSVAGLGGGGGGGGSLRVTLTAMASPGTRYQSVANEGFHWRRMMSSSMAVAEEQGMKNVENQGKEKEKEKEKEKEKEKEKENALVSSYWGIYRPRITREDGSEWPWNCFMPWDTYSANLSIDLGKHHEPKCFLDKFAYRVVKLLRIPTDLFFQRRYGCRAVMLETVAAVPGMVAGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLTSPKLAHRIVGYLEEEAIHSYTEYLKDINEGKIENVPAPAIAIDYWRLPKDARLKDVITVIRADEGHHRDVNHFASDIHFQGKELRESAAPLGFNNFSCSLMAEGELERGETNCGLASMDSIESRWVFQDEDQSEIDDDEDEEDDDEDGERHRLDLESEEEDNVEQKLIRTGPRIDSFDVEALEVPGAQRNDYEDFSVGKKIGLAFQTLGVVFGDVGTSPLYTFSVMFNKVPINGDEDVIGALSLVIYTLILISLVKYVLVVLLANDDGEGGTFALYSLICRHAKVSLLPNQLPSDTRISSFRLKVPSAELERSLKIKEKLEASLTLKKLILILVLAGTSMVIADGVVTPAMSVMSAVGGLKIAVEAINQDEAVMISVACLIVLFSVQKYGTSKVGLAVGPALFIWFCTLAGLGIYNLVIYDRSVLKAFNPVHIYYFFKRNSTNAWYCLGGCILCATGSEAMFADLCYFPVRSIQLTFVFLVLPCLFLGYLGQAAYLISNHNGAEHVFYNSVPKSAFWPVFLIANVAALIASRAMTTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVLNWFLLAVCLVVICSISSMYEIGNAYGIAELGVMMMTTILLTIVMLLIWQINIIIVMGFAMIFLGIELIFFSSVLWGVGDGSWIILVFAVIMFFIMYIWNYGSKLKYETEVKQKLSMDLMRELGCNLGTIRAPGIGLVYNELVKGIPAIFGHFLTTLPAVHSMIIFVCIKYVPVPVVPQSERFLFRRVCPKSYHIFRCIARYGYKDVRKENHQAFEQLLIESLEKFIRREAQERSLESDGDDDTDSDEIHRSQLLIAPNGSVYSLGIPLLAEFNETRPITEIINVPEEVQPIESLEPSIPDAEQSLERELSFIRKAKESGVVYLLGHGDIRARKDSWFIKKLMINYFYAFLRKNSRRGIANLSVPHTHLMQLIFYGHLDSEEALLHPTRKAFREAQFVYAVNYYGRDNLNITQLKRFSRQLWAQQTIWNAFIYELCIETFWFINSSLLANSMLCPWLIHAEGPDT 1297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1995766 2008545 - CmaCh04G003940.1 Cma04g00394 291475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00394 1297 PANTHER POTASSIUM TRANSPORTER 7 382 1205 - -
Cma04g00394 1297 MobiDBLite consensus disorder prediction 392 410 - -
Cma04g00394 1297 CDD AOX 172 339 IPR002680 GO:0009916
Cma04g00394 1297 MobiDBLite consensus disorder prediction 411 426 - -
Cma04g00394 1297 Pfam K+ potassium transporter 465 1038 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma04g00394 1297 Coils Coil 76 106 - -
Cma04g00394 1297 MobiDBLite consensus disorder prediction 71 99 - -
Cma04g00394 1297 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 382 1205 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma04g00394 1297 MobiDBLite consensus disorder prediction 78 99 - -
Cma04g00394 1297 Pfam Alternative oxidase 145 335 IPR002680 GO:0009916
Cma04g00394 1297 TIGRFAM kup: potassium uptake protein 464 1204 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma04g00394 1297 MobiDBLite consensus disorder prediction 389 426 - -
Cma04g00394 1297 Gene3D Alternative oxidase 121 352 IPR038659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00394 Cma-Chr4:1995766 Cma13g00853 Cma-Chr13:7035994 0 dispersed
Cma04g01913 Cma-Chr4:10149523 Cma04g00394 Cma-Chr4:1995766 0 transposed
Cma16g00255 Cma-Chr16:1207709 Cma04g00394 Cma-Chr4:1995766 0 transposed
Cma16g00254 Cma-Chr16:1185501 Cma04g00394 Cma-Chr4:1995766 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00394 - - csv:101214942 1506.12