Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g00396 | ATGGATAACTTATGCTGCTTCAATTCTGTGTATTCTCAGTTTGTAGGAGGACGTTCGTCATGTAGCTCCGGAAAGGGCCGGGGCAATCAATGCCCTGCGAAATATGGTTTTAGTTTGGTAAAAGGCAAGGCAAATCATCCCATGGAAGATTATCATGTTGCTAAATTTATCACAGTGCATGGCCAGGAGCTTGGCCTCTTTGCTATATATGATGGGCACCTAGGAGATAGCGTACCAGCCTATCTACAGAAGCATCTATTTCCCAATATTCTCAAGGATGAGGAATTCTGGTCAAATCCGCGTAGCTCTATCTTTAAGGCGTATGAGACGACAGACCAAGCAATACTCTCACACAGTCCTGACTTGGGAAGAGGTGGATCCACTGCTGTCACTGCAATTTTAATAAACGGTCAAAAATTATGGGTGGCTAATGTCGGAGATTCACGAGCAGTCCTTTCAAAAAGAGGGCAGGAAGTACAAATGTCTGTCGATCACGAACCGAACGCTGAGCGTGGAAGTATCGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCTAGAGTGAACGGGCAACTTGCAGTTTCTCGAGCGTTTGGCGACAAAAACCTCAAAACACACTTGCGATCTGATCCCGACATAAAGAACGCCGATATCAACTCTGACACCGAGCTTCTAATCTTAGCAAGCGATGGTCTATGGAAGGTCATGTCGAATCAAGAAGCCGTGGACATAGCGAGAAGAACCAAAGATCCCCAGAGGGCAGCAAAGCAACTAGCAGCAGAAGCACTGAAACGGGAAAGCAAAGACGACATCTCGATCATCGTCGTTCGTTTCAAAGGGTAA | 852 | 46.36 | MDNLCCFNSVYSQFVGGRSSCSSGKGRGNQCPAKYGFSLVKGKANHPMEDYHVAKFITVHGQELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPRSSIFKAYETTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKRGQEVQMSVDHEPNAERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIKNADINSDTELLILASDGLWKVMSNQEAVDIARRTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2012083 | 2015680 | + | CmaCh04G003960.1 | Cma04g00396 | 291477 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g00396 | 283 | CDD | PP2Cc | 34 | 281 | IPR001932 | - | |
| Cma04g00396 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 282 | IPR015655 | GO:0004722|GO:0006470 | |
| Cma04g00396 | 283 | Gene3D | - | 30 | 283 | IPR036457 | - | |
| Cma04g00396 | 283 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 281 | IPR001932 | - | |
| Cma04g00396 | 283 | SUPERFAMILY | PP2C-like | 31 | 282 | IPR036457 | - | |
| Cma04g00396 | 283 | Pfam | Protein phosphatase 2C | 43 | 274 | IPR001932 | - | |
| Cma04g00396 | 283 | PANTHER | PHOSPHATASE 2C FAMILY PROTEIN | 1 | 282 | - | - | |
| Cma04g00396 | 283 | SMART | PP2C_4 | 30 | 279 | IPR001932 | - | |
| Cma04g00396 | 283 | SMART | PP2C_SIG_2 | 45 | 281 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01606 | Cma-Chr1:11067033 | Cma04g00396 | Cma-Chr4:2012083 | 2.68E-157 | dispersed | |
| Cma04g00396 | Cma-Chr4:2012083 | Cma09g00557 | Cma-Chr9:2534104 | 8.67E-149 | dispersed | |
| Cma16g00257 | Cma-Chr16:1214713 | Cma04g00396 | Cma-Chr4:2012083 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g00396 | K17506 | - | csv:101214223 | 538.11 |