Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00409 ATGGGAAGAGGGAAGATTGTGATAAGAAGAATAGACAATTCAACGAGCAGGCAAGTGACGTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTCGAGAGCTTTCAATTCTTTGTGACGCTGAAGTTGGATTGATCGTTTTCTCAAGCACTGGAAAGCTCTATGATTATTCCACCACCAGCATAAGATCAATTACCGATCGTTACTACAAGGTGAAAGAGGAGCAAAATCAGCTGATTAACTCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCAGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGCGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTAGAAAGCAAGTTGGAAATGAGCTTGAAAGGTGTCCGTGTAGAAAAGGAAAAGATTTTAAGGGATGAAATTACGGAACTAAGGCAGAAGGGGAATCATATGCATCAAGAAAATGTGGAACTATACAAGAAATTAGATATGATTCACAAGGAAAATGCAGAACTGCAAATGAAGGTTTATGGACCAATGGAAGTGGATAAAACGAGCAGAAGCTCAGCTCAACAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGACAGCCACAACCACAAAACAGTGAAACATCAGTACCAGGGATAAAGCTGGGATTGCAACTGCAATAA 711 40.23 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIVFSSTGKLYDYSTTSIRSITDRYYKVKEEQNQLINSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESKLEMSLKGVRVEKEKILRDEITELRQKGNHMHQENVELYKKLDMIHKENAELQMKVYGPMEVDKTSRSSAQQFTITNRYSMPALQLRQPQPQNSETSVPGIKLGLQLQ 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2097635 2105991 + CmaCh04G004090.1 Cma04g00409 291490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00409 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma04g00409 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma04g00409 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma04g00409 236 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cma04g00409 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma04g00409 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma04g00409 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma04g00409 236 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Cma04g00409 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma04g00409 236 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Cma04g00409 236 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma04g00409 236 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma04g00409 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 236 - -
Cma04g00409 236 PANTHER - 1 236 - -
Cma04g00409 236 MobiDBLite consensus disorder prediction 211 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01466 Cma-Chr1:10310670 Cma04g00409 Cma-Chr4:2097635 2.24E-96 dispersed
Cma04g00409 Cma-Chr4:2097635 Cma09g00600 Cma-Chr9:2804731 3.67E-97 dispersed
Cma16g00281 Cma-Chr16:1313922 Cma04g00409 Cma-Chr4:2097635 5.06E-127 wgd
Cma03g00854 Cma-Chr3:6379767 Cma04g00409 Cma-Chr4:2097635 1.31E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34764 PF01486 K-box 1.80E-25 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00409 K09264 - csv:101203098 411.764