Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00412 ATGGCCACCGGTGTGCTGCTCCGTTCTCTTCGACGTCGCGATTTAGCCTCATCCTCCATTTCAGCTTACCGATCCTTAACAAGCAATGCCAAGCCGTCATTGTCCAGGTCTCACCTCAGCCAATCATGGACAAGTTTGTCCAGGCCATTCAGTTCAAAGCCAGCTGGGAATGATGTTATCGGGATCGACTTGGGTACCACCAATTCTTGTGTTTCTGTAATGGAAGGGAAGAATCCAAAAGTTATTGAAAACTCTGAAGGTGCTAGGACCACACCATCAGTGGTTGCTTTCAATCAGAAAGGTGAACTACTTGTAGGAACACCAGCAAAGAGACAGGCAGTTACTAATCCAACGAATACTGTGTTTGGAACCAAACGTCTCATTGGTAGACGCTTTGATGACCCCCAGACACAGAAGGAAATGAAGATGGTACCATACAAAATAGTCAGAGCTCCTAATGGAGATGCTTGGGTTGAAGCAAATGGACAGCAGTACTCACCAAGTCAGATTGGTGCTTTTGTTCTAACAAAGATGAAGGAAACTGCTGAAGCCTATCTGGGAAAGAGTGTGTCCAAGGCTGTTATTACCGTTCCAGCTTATTTCAATGATGCACAGAGACAGGCAACAAAGGATGCTGGCAGGATTGCTGGTTTAGATGTTCAAAGAATTATCAATGAGCCCACTGCTGCTGCACTTTCCTATGGAATGAATAATAAGGAAGGTCTTATTGCTGTCTTTGATCTTGGTGGTGGCACATTCGATGTTTCCATCTTGGAGATATCCAATGGTGTTTTTGAGGTGAAATCCACAAATGGTGACACATTCTTGGGAGGAGAGGATTTTGACAATGCTCTTCTGGACTTCCTGGTTAGTGAGTTCAAGCGAACTGATGGAATTGACCTTACCAAGGACAAGCTTGCCTTGCAGAGGCTTAGGGAGGCTGCAGAGAAGGCAAAGATTGAACTATCATCTACATCACAGACTGAAATTAACCTGCCATTTATCACTGCTGATGCATCTGGTGCAAAGCATTTGAACATCACTTTGACCAGGTCAAAATTTGAAAGTCTAGTTAGTAACCTGATTGAAAGGACCAAGGCACCATGCAAAAATTGTTTGAAGGATGCCAATATTTCCATCAAAGAAGTGGATGAAGTGCTTTTAGTGGGTGGAATGACTCGTGTACCTAAGGTGCAAGAAGTTGTCACAGAAATTTTTGGTAAGAGCCCCAGTAAAGGGGTGAATCCTGATGAAGCAGTTGCCATGGGAGCTGCAATTCAGGGTGGCATTCTTCGTGGTGATGTCAAAGAATTGCTTCTTTTGGATGTTACCCCACTATCGCTTGGTATTGAGACGCTTGGCGGTATATTTACAAGGTTGATCAATCGGAACACTACCATTCCAACTAAGAAGAGCCAGGTGTTCTCAACTGCAGCTGACAACCAGACCCAGGTGGGTATCAAGGTATTACAAGGTGAGAGAGAAATGGCTTCTGACAACAAGCTTCTAGGGGAGTTTGAGTTGGTTGGAATTCCTCCCGCTCCAAGAGGAATGCCTCAAGTTGAGGTGACATTTGATATTGATGCCAATGGTATTGTTACTGTCTCGGCCAAGGACAAGTCCACCGGTAAAGAGCAACAAATCACCATTCGATCTTCTGGAGGACTCTCAGATGACGAAATAGAGAAAATGGTGAAGGAAGCAGAGTTGCACGCCCAGAAGGATCAAGAGAGGAAATCTCTTATTGACATCAGAAACAGTGCAGATACCACCATCTACAGCATTGAGAAGAGCTTGGGTGAATACAGGGAGAAAATACCTAGTGAGGTTACCAAGGAAATTGAGGACGCAGTAGCAGATTTGAGGAAGGCAATGTCGGGAGATAACATTGAAGAGATCAAGGCAAAACTCGACGTCGCCAACAAAGCTGTTTCCAAGATTGGGCAACATATGGCTGGTGGTTCAGGTGGTGATGCTGCTTCTGGAGGGTCTCAGGGTGGCGAACAAGCTTCTGAAGCTGAGTACGAAGAGGTGAAGAAATAA 2043 44.98 MATGVLLRSLRRRDLASSSISAYRSLTSNAKPSLSRSHLSQSWTSLSRPFSSKPAGNDVIGIDLGTTNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKSTNGDTFLGGEDFDNALLDFLVSEFKRTDGIDLTKDKLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFESLVSNLIERTKAPCKNCLKDANISIKEVDEVLLVGGMTRVPKVQEVVTEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKLLGEFELVGIPPAPRGMPQVEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSDDEIEKMVKEAELHAQKDQERKSLIDIRNSADTTIYSIEKSLGEYREKIPSEVTKEIEDAVADLRKAMSGDNIEEIKAKLDVANKAVSKIGQHMAGGSGGDAASGGSQGGEQASEAEYEEVKK 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2115963 2119462 + CmaCh04G004120.1 Cma04g00412 291493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00412 680 Gene3D Actin; Chain A, domain 4 278 365 - -
Cma04g00412 680 SUPERFAMILY Actin-like ATPase domain 240 431 IPR043129 -
Cma04g00412 680 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 431 555 IPR029047 -
Cma04g00412 680 Gene3D - 556 653 IPR029048 -
Cma04g00412 680 PRINTS 70kDa heat shock protein signature 58 71 - -
Cma04g00412 680 PRINTS 70kDa heat shock protein signature 86 98 - -
Cma04g00412 680 PRINTS 70kDa heat shock protein signature 109 117 - -
Cma04g00412 680 PRINTS 70kDa heat shock protein signature 193 213 - -
Cma04g00412 680 PRINTS 70kDa heat shock protein signature 251 261 - -
Cma04g00412 680 PRINTS 70kDa heat shock protein signature 383 399 - -
Cma04g00412 680 PRINTS 70kDa heat shock protein signature 414 434 - -
Cma04g00412 680 PRINTS 70kDa heat shock protein signature 437 456 - -
Cma04g00412 680 PRINTS 70kDa heat shock protein signature 518 534 - -
Cma04g00412 680 CDD HSPA9-like_NBD 56 431 - -
Cma04g00412 680 Gene3D - 235 415 - -
Cma04g00412 680 SUPERFAMILY Actin-like ATPase domain 59 239 IPR043129 -
Cma04g00412 680 Coils Coil 301 328 - -
Cma04g00412 680 ProSitePatterns Heat shock hsp70 proteins family signature 1. 62 69 IPR018181 -
Cma04g00412 680 PANTHER HEAT SHOCK 70 KDA PROTEIN, MITOCHONDRIAL 31 662 - -
Cma04g00412 680 ProSitePatterns Heat shock hsp70 proteins family signature 3. 386 400 IPR018181 -
Cma04g00412 680 ProSitePatterns Heat shock hsp70 proteins family signature 2. 245 258 IPR018181 -
Cma04g00412 680 MobiDBLite consensus disorder prediction 649 680 - -
Cma04g00412 680 Pfam Hsp70 protein 59 651 IPR013126 GO:0005524|GO:0140662
Cma04g00412 680 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 433 589 IPR029047 -
Cma04g00412 680 Hamap Chaperone protein DnaK [dnaK]. 56 678 IPR012725 GO:0005524|GO:0006457|GO:0051082
Cma04g00412 680 Gene3D - 60 428 - -
Cma04g00412 680 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 556 662 IPR029048 -
Cma04g00412 680 TIGRFAM prok_dnaK: chaperone protein DnaK 59 651 IPR012725 GO:0005524|GO:0006457|GO:0051082
Cma04g00412 680 PANTHER HEAT SHOCK PROTEIN 70KDA 31 662 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00412 Cma-Chr4:2115963 Cma15g01445 Cma-Chr15:9147002 0 dispersed
Cma16g00284 Cma-Chr16:1341110 Cma04g00412 Cma-Chr4:2115963 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00412 K04043 - csv:101216102 1222.22