Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00425 | ATGAGGAAGAGTAGAGGCAGGCAGAAGGTTGAGATGGTTAAGATGCCTAATGAGAGCAACCTTCAAGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTTTGCGGTGCCGAGATTGCCATCATCGTCTTCTCCCCCGGGAAGAAAGTCTTCTCCTTTGGTCACCCTTGTGTCGAGGCTCTTATCGAACGCTTCGTGACTCGAAACCCTCCACCGAGCTCTGGTACACTCCAACTTATTGAAGCTCATCGAAATGCTAATGTTCGTGAACTAAATGCACAACTAACTCAAGTGTTGAACCATTTGGAGATGGAGCGGAAACGGGGCGAGGAGTTGAATAAGTTACGAAAGGCTAATCAGCCGCAATGCTGGTGGGAACTTCCTATCGAAGAAATGGAATTGTATCAACTCGAACAACTTAAATTGTCGTTGGATGAGCTAAAAAAGAATGTTATGCAACAAGCTGATCGGATTTTGATTCAAACCTCCAATGGCAACCCGCCCCCACAATTCTTCCCGACTCCGACGCCAGCAAACCCGAACCAGCAAGGCGGTGTCTATGTCGTCGATCAGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA | 660 | 48.03 | MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELNKLRKANQPQCWWELPIEEMELYQLEQLKLSLDELKKNVMQQADRILIQTSNGNPPPQFFPTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2177700 | 2178446 | - | CmaCh04G004250.1 | Cma04g00425 | 291506 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00425 | 219 | CDD | MADS_MEF2_like | 6 | 73 | IPR033896 | GO:0000977|GO:0045944 | |
Cma04g00425 | 219 | SUPERFAMILY | SRF-like | 6 | 78 | IPR036879 | GO:0003677|GO:0046983 | |
Cma04g00425 | 219 | Gene3D | - | 83 | 175 | - | - | |
Cma04g00425 | 219 | PANTHER | MADS BOX PROTEIN | 5 | 177 | - | - | |
Cma04g00425 | 219 | SMART | madsneu2 | 5 | 64 | IPR002100 | GO:0003677|GO:0046983 | |
Cma04g00425 | 219 | PRINTS | MADS domain signature | 7 | 27 | IPR002100 | GO:0003677|GO:0046983 | |
Cma04g00425 | 219 | PRINTS | MADS domain signature | 27 | 42 | IPR002100 | GO:0003677|GO:0046983 | |
Cma04g00425 | 219 | PRINTS | MADS domain signature | 42 | 63 | IPR002100 | GO:0003677|GO:0046983 | |
Cma04g00425 | 219 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 | 5 | 177 | - | - | |
Cma04g00425 | 219 | ProSiteProfiles | MADS-box domain profile. | 5 | 65 | IPR002100 | GO:0003677|GO:0046983 | |
Cma04g00425 | 219 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 16 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cma04g00425 | 219 | Coils | Coil | 145 | 165 | - | - | |
Cma04g00425 | 219 | Coils | Coil | 93 | 120 | - | - | |
Cma04g00425 | 219 | Gene3D | - | 17 | 81 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00425 | Cma-Chr4:2177700 | Cma17g00078 | Cma-Chr17:384433 | 1.76E-36 | dispersed | |
Cma04g00425 | Cma-Chr4:2177700 | Cma07g00118 | Cma-Chr7:635623 | 8.61E-54 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34765 | PF00319 | SRF-TF | 3.50E-24 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00425 | - | - | csv:101221957 | 376.326 |