Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00425 ATGAGGAAGAGTAGAGGCAGGCAGAAGGTTGAGATGGTTAAGATGCCTAATGAGAGCAACCTTCAAGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTTTGCGGTGCCGAGATTGCCATCATCGTCTTCTCCCCCGGGAAGAAAGTCTTCTCCTTTGGTCACCCTTGTGTCGAGGCTCTTATCGAACGCTTCGTGACTCGAAACCCTCCACCGAGCTCTGGTACACTCCAACTTATTGAAGCTCATCGAAATGCTAATGTTCGTGAACTAAATGCACAACTAACTCAAGTGTTGAACCATTTGGAGATGGAGCGGAAACGGGGCGAGGAGTTGAATAAGTTACGAAAGGCTAATCAGCCGCAATGCTGGTGGGAACTTCCTATCGAAGAAATGGAATTGTATCAACTCGAACAACTTAAATTGTCGTTGGATGAGCTAAAAAAGAATGTTATGCAACAAGCTGATCGGATTTTGATTCAAACCTCCAATGGCAACCCGCCCCCACAATTCTTCCCGACTCCGACGCCAGCAAACCCGAACCAGCAAGGCGGTGTCTATGTCGTCGATCAGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA 660 48.03 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELNKLRKANQPQCWWELPIEEMELYQLEQLKLSLDELKKNVMQQADRILIQTSNGNPPPQFFPTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2177700 2178446 - CmaCh04G004250.1 Cma04g00425 291506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00425 219 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977|GO:0045944
Cma04g00425 219 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677|GO:0046983
Cma04g00425 219 Gene3D - 83 175 - -
Cma04g00425 219 PANTHER MADS BOX PROTEIN 5 177 - -
Cma04g00425 219 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Cma04g00425 219 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Cma04g00425 219 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Cma04g00425 219 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Cma04g00425 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 177 - -
Cma04g00425 219 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Cma04g00425 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 61 IPR002100 GO:0003677|GO:0046983
Cma04g00425 219 Coils Coil 145 165 - -
Cma04g00425 219 Coils Coil 93 120 - -
Cma04g00425 219 Gene3D - 17 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00425 Cma-Chr4:2177700 Cma17g00078 Cma-Chr17:384433 1.76E-36 dispersed
Cma04g00425 Cma-Chr4:2177700 Cma07g00118 Cma-Chr7:635623 8.61E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34765 PF00319 SRF-TF 3.50E-24 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00425 - - csv:101221957 376.326