Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00425 ATGAGGAAGAGTAGAGGCAGGCAGAAGGTTGAGATGGTTAAGATGCCTAATGAGAGCAACCTTCAAGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTTTGCGGTGCCGAGATTGCCATCATCGTCTTCTCCCCCGGGAAGAAAGTCTTCTCCTTTGGTCACCCTTGTGTCGAGGCTCTTATCGAACGCTTCGTGACTCGAAACCCTCCACCGAGCTCTGGTACACTCCAACTTATTGAAGCTCATCGAAATGCTAATGTTCGTGAACTAAATGCACAACTAACTCAAGTGTTGAACCATTTGGAGATGGAGCGGAAACGGGGCGAGGAGTTGAATAAGTTACGAAAGGCTAATCAGCCGCAATGCTGGTGGGAACTTCCTATCGAAGAAATGGAATTGTATCAACTCGAACAACTTAAATTGTCGTTGGATGAGCTAAAAAAGAATGTTATGCAACAAGCTGATCGGATTTTGATTCAAACCTCCAATGGCAACCCGCCCCCACAATTCTTCCCGACTCCGACGCCAGCAAACCCGAACCAGCAAGGCGGTGTCTATGTCGTCGATCAGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA 660 48.03 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELNKLRKANQPQCWWELPIEEMELYQLEQLKLSLDELKKNVMQQADRILIQTSNGNPPPQFFPTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2177700 2178446 - CmaCh04G004250.1 Cma04g00425 291506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00425 219 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977|GO:0045944
Cma04g00425 219 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677|GO:0046983
Cma04g00425 219 Gene3D - 83 175 - -
Cma04g00425 219 PANTHER MADS BOX PROTEIN 5 177 - -
Cma04g00425 219 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Cma04g00425 219 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Cma04g00425 219 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Cma04g00425 219 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Cma04g00425 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 177 - -
Cma04g00425 219 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Cma04g00425 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 61 IPR002100 GO:0003677|GO:0046983
Cma04g00425 219 Coils Coil 145 165 - -
Cma04g00425 219 Coils Coil 93 120 - -
Cma04g00425 219 Gene3D - 17 81 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00425 - - - csv:101221957 376.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00425 Cma-Chr4:2177700 Cma17g00078 Cma-Chr17:384433 1.76E-36 dispersed
Cma04g00425 Cma-Chr4:2177700 Cma07g00118 Cma-Chr7:635623 8.61E-54 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g00425 . 4 160 Type I MADS-box Gene Family AT2G24840 53.8 6.5e-38 155.2
Cma04g00425 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 3.5e-48 189.5
Cma16g00680 . 1 230 Type I MADS-box Gene Family AT1G77950 51.4 1.2e-54 210.7
Cma10g01184 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.6e-53 204.9
Cma13g00394 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 2.5e-44 176.8
Cma04g00425 . 4 160 Type I MADS-box Gene Family AT2G24840 53.8 6.5e-38 155.2
Cma04g00425 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 3.5e-48 189.5
Cma16g00680 . 1 230 Type I MADS-box Gene Family AT1G77950 51.4 1.2e-54 210.7
Cma10g01184 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.6e-53 204.9
Cma13g00394 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 2.5e-44 176.8
Cma04g00425 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 3.5e-48 189.5
Cma10g01184 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.6e-53 204.9
Cma13g00394 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 2.5e-44 176.8
Cma04g00425 . 4 160 Type I MADS-box Gene Family AT2G24840 53.8 6.5e-38 155.2
Cma16g00680 . 1 230 Type I MADS-box Gene Family AT1G77950 51.4 1.2e-54 210.7
Cma04g00425 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 3.5e-48 189.5
Cma10g01184 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.6e-53 204.9
Cma13g00394 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 2.5e-44 176.8
Cma04g00425 . 4 160 Type I MADS-box Gene Family AT2G24840 53.8 6.5e-38 155.2
Cma16g00680 . 1 230 Type I MADS-box Gene Family AT1G77950 51.4 1.2e-54 210.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34765 PF00319 SRF-TF 3.50E-24 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00425 Cma_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0