Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00451 ATGGAGCCTATAGCAGAAAGAGAATGGATCTCTGAGGAATCTGATTTCATGGCTAATTTTCTCAGTAATTACTGTCTCCCAAATGAGCTAAGCTCAGATTTGAGCTTGGAAATCCCTTGTGCTTATTGGGAATCCAATGAACCACCATCACTGTCCATGGCAGCCATGGATGAGCCATCTTATTATTCATCAGATTCCCTCCCTCTTTGGCTGCCTAATGGTGCTTCTTTGTCCTTGGATTTCTCGATGGAGGACGATCGTTTGGACGACAACAGTTCGAGTCGAAAAACAAGGCAATGTAGGCTGCAACACTCCCTTGCTGACCCTGCTGCTGCTGCTGTTGCTGTCAATGGGAAAAAGAGGAAAGCTGAGATACATGAGAAAGTTGCATCGATGTCGGTCGTCGAGAACTCGAAGAAGAGGAACACCAGGCCACCGAAGATCATGAAGCTTTGTTCGGCTAGCTGCAATGAAGAGGATCACATTGGTCAGTGCACAAGTAGCTTCAGCTCTGAGGAGTCTCAAGAAATCAATGGTGGAATTAGTTCAAGTTCAAGCTCAAAAGGGTCTGCCTCTTTGACCTCAAATGGGAAGCCAAGAGCTAGTAGAGGCTCAGCCACTGACCCTCAAAGCCTTTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGGTTGAAGATCTTACAAAGCCTCGTCCCGAATGGCACGAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTGAATATGTGAAGTTCTTGCAGCTTCAAATCAAGCTGTTGAGCTCTGATGATCTATGGATGTATGCGCCAATTGCTTACAATGGAATGGATATTGGACTTAACTTGAAGCTCATGAAGCAAGACAATGCATCACAGTAG 882 44.78 MEPIAEREWISEESDFMANFLSNYCLPNELSSDLSLEIPCAYWESNEPPSLSMAAMDEPSYYSSDSLPLWLPNGASLSLDFSMEDDRLDDNSSSRKTRQCRLQHSLADPAAAAVAVNGKKRKAEIHEKVASMSVVENSKKRNTRPPKIMKLCSASCNEEDHIGQCTSSFSSEESQEINGGISSSSSSKGSASLTSNGKPRASRGSATDPQSLYARKRRERINERLKILQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2305604 2306909 - CmaCh04G004510.1 Cma04g00451 291532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00451 293 Gene3D - 207 263 IPR036638 GO:0046983
Cma04g00451 293 SMART finulus 211 260 IPR011598 GO:0046983
Cma04g00451 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 254 IPR011598 GO:0046983
Cma04g00451 293 Pfam Helix-loop-helix DNA-binding domain 215 255 IPR011598 GO:0046983
Cma04g00451 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 134 287 - -
Cma04g00451 293 MobiDBLite consensus disorder prediction 167 215 - -
Cma04g00451 293 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 134 287 - -
Cma04g00451 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 271 IPR036638 GO:0046983
Cma04g00451 293 MobiDBLite consensus disorder prediction 167 209 - -
Cma04g00451 293 CDD bHLH_AtIND_like 206 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00451 Cma-Chr4:2305604 Cma04g02297 Cma-Chr4:16014445 9.45E-26 dispersed
Cma15g00740 Cma-Chr15:3601573 Cma04g00451 Cma-Chr4:2305604 1.75E-08 dispersed
Cma11g01701 Cma-Chr11:11238101 Cma04g00451 Cma-Chr4:2305604 3.64E-52 wgd
Cma12g00596 Cma-Chr12:3109902 Cma04g00451 Cma-Chr4:2305604 9.17E-51 wgd
Cma16g00324 Cma-Chr16:1521773 Cma04g00451 Cma-Chr4:2305604 2.34E-114 wgd
Cma19g00554 Cma-Chr19:6318015 Cma04g00451 Cma-Chr4:2305604 6.77E-51 wgd
Cma04g00451 Cma-Chr4:2305604 Cma05g00143 Cma-Chr5:640612 8.50E-52 wgd
Cma04g00451 Cma-Chr4:2305604 Cma09g00285 Cma-Chr9:1167219 2.32E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34767 PF00010 HLH 6.60E-10 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00451 - - mcha:111017743 359.762