Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00470 ATGAGAAGCATTGAAGAACAGAGAACTGTAACAGGGTTCGCCGCCAAAGACCCATCCGGGATTCTCTCTCCCTACACTTATTCTCTCAGAGACACCGGCCCTGAAGATGTTTTCATTAAAGTGATTTGCTGTGGAGTATGCCACTCTGATCTTCACCAAATAAAAAATGACCTCGGCATGTCCAATTATCCGATGGTTCCTGGGCATGAGGTGGTCGGAGAAGTGGTGGAGGTTGGGTCGGATGTTGGTCGGTTCAGAACAGGGGAGTTGGTCGGAGTTGGGTGTATTGTTGGATCTTGTTCGAGTTGTAATCCCTGCAATTCCGATAAGGAGCAGTATTGTAACAGGAGAATCTGGAGTTATAATGATGTGTATCATGATGGCCGTCCCACCCAAGGCGGGTTCTCCTCCGCCATGGTCGTTCACCAAAAATTTGTGGTGAAAATCCCAGAAGGGATGTCGCCGGAGCAGGCGGCGCCGCTATTGTGCGCTGGAGTGACAGTGTACAGCCCGTTGAGTCACTTTGGGCTGAAACAGAGTGGACTCAGAGGCGGAATTTTGGGGCTAGGCGGCGTGGGGCATATGGGTGTGAAAGTGGCGAAGGCTCTGGGTCACCACGTGACGGTGATAAGCTCGTCGGAGAAGAAGAGGGTGGAGGCTCTGGAAGATCTCGGCGCCGATGAGTACTTGGTCAGCTCCGACAGTACTCAAATGGAAAGAGCCATTGATTCGCTGGATTACATCATCGACACAATCCCTGTTTTTCATCCTCTCGAGCCGTATCTGTCACTTCTGAAACTCGACGGCAAATTGATCTTGATGGGCGTTATTAATAAGCCATTGCAATTCGTTTCCCCTGTTCTTATGCTCGGGAGGAAGACGATTACAGGGAGCTTCATCGGAAGCATGACGGAGACACAAGAAGTGTTGGATTTCTTCAAAGAGAAGGAGCTGACCTCCATAATTGAAGTGATAAAGCTTGATTACATTAACAAGGCGTTGGAGAGGTTGGAGAAGAATGACGTCAGATACAGGTTCGTCGTCGATGTCGCCGGAAGCAAGTTGCCTCAGTGA 1074 49.81 MRSIEEQRTVTGFAAKDPSGILSPYTYSLRDTGPEDVFIKVICCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVGRFRTGELVGVGCIVGSCSSCNPCNSDKEQYCNRRIWSYNDVYHDGRPTQGGFSSAMVVHQKFVVKIPEGMSPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSEKKRVEALEDLGADEYLVSSDSTQMERAIDSLDYIIDTIPVFHPLEPYLSLLKLDGKLILMGVINKPLQFVSPVLMLGRKTITGSFIGSMTETQEVLDFFKEKELTSIIEVIKLDYINKALERLEKNDVRYRFVVDVAGSKLPQ 357
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 2402661 2404445 + CmaCh04G004700.1 Cma04g00470 291551
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00470 357 CDD CAD1 11 349 - -
Cma04g00470 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Cma04g00470 357 Gene3D - 164 320 - -
Cma04g00470 357 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491
Cma04g00470 357 Pfam Zinc-binding dehydrogenase 191 314 IPR013149 -
Cma04g00470 357 Gene3D - 13 350 - -
Cma04g00470 357 SUPERFAMILY GroES-like 17 181 IPR011032 -
Cma04g00470 357 Pfam Alcohol dehydrogenase GroES-like domain 35 149 IPR013154 -
Cma04g00470 357 PANTHER ALDEHYDE REDUCTASE 6 357 - -
Cma04g00470 357 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 6 357 - -
Cma04g00470 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 318 IPR036291 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00470 Cma-Chr4:2402661 Cma20g01080 Cma-Chr20:8298392 1.27E-120 dispersed
Cma11g01723 Cma-Chr11:11428029 Cma04g00470 Cma-Chr4:2402661 0 wgd
Cma16g00342 Cma-Chr16:1603529 Cma04g00470 Cma-Chr4:2402661 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00470 K00083 - csv:101222395 615.15