Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00474 ATGAACTCCATTACCACAAATCTTGCTCTGTTTTGGAGCTTCGCTTTCTTCTTTCACTTTCTTCTTCGTTCTCCTTCTCTGGCTCTCAACGGCGATGCCACCCTCTTGATTTCTCTCAAGCGCTCCATTCTCGGAGATCCTTTGAATGTTTTGGCTAATTGGAATTTCAATGATGACACCCCCTGTTCTTGGCGTGGAGTCACCTGTACTGACCTTCAAACCGACGGTGGTGGCTGGACGGATTTCCTCAGAGTCACTGCCCTGTCCCTCCCCGACAGTCAGCTTCTGGGTTCCATTCCGGATGAGCTTGGAATGATTGAACATCTTCGTCTTCTCGATCTTTCCGGTAATTTCTTTAATGGGTCTTTGCCGGTTTCCATTTTCAATGCTTCGGAGCTTCAGATTCTTTCTCTGTCGAATAATGTCATCTCCGGGGAGTTGCCGGTGGCTATTGGGGGTTTGAGGAGTCTTCAGGTTTTGAATCTGTCTGATAATGCGTTGGCTGGGAAAGTGCCCGGAAATCTCACTGCTCTGAGGAATCTCACTGTGGTTTCTTTGAGGAGTAATTACTTCACCGGAGAGATTCCGGGGAATTTCAGTTCGACGGAGGTTTTGGATCTGTCGTCTAATTTGCTTAATGGGTCTCTGCCGGCGGATTTTGGTGGGGAGAAACTGCGGTATTTGAACTTCTCTTACAATAAAATTTCAAGTTCGATTCCGCTGGAGTTCGCCAAGAAGATTCCGGCGAATGCGACAATGGATCTCTCTTTCAACAATCTCACCGGAGTAATTCCTCAGTCGACTGCTCTGCTCAACCAGAAAACAGAGGCGTTCGCCGGAAATGAAGATCTCTGCGGGAAGCCATTGAAGCATCTCTGTTCGATTCCTTCTTCACTCACAACTCCCCCAAATGTTTCTGATTCTTCATCTTCTTCTCCAGCTATCGCCGCCATACCCAAAACAATCGGCGCCATTCCGGCAACACAGTCCCTCGGAGGTCCAAACGGCACACAAACTCCTCCGCCCCGTAACACCATGAAACCCATCACAATAGCCGCAATCGCCGTTGGAGACCTCGCCGGAGTCGCCATTCTTGCCGTCGTGATTCTCTACGTCTACCATCACCAGAAACAAAAAAACCCCAATTCCAAAACCCCTAAATCCACCGAGAAGAAGCCGCCGATTGGGTCACAACAAACCCTCCAAACTAATCAGAAAAAACCCTCATCAGTGTTGTTCTGTTTACCCACCAAAGGCGAAGAGACATCAGAGGCAACGAGTTCCTCCGACGGCGAAGAACAAAGAGACAAACCAAGCACAACCCACGACGGAGAGAACAGAGAGAGTAAGAAAAACGGTGTTCTCGTTACAGTAGACGTAGAAACAGAGCTCGAATTGGAGACTCTGTTAAAGGCATCAGCGTATATACTCGGAGCGAGCGGCGGAAGCATTGTGTACAAGGCAGTGCTCGAGGACGGCACGGCATTCGCCGTTCGAAGAATCGGCGACAGCGGCATTGAAAGTTTCAAGGATTTCGAGACCCAAGTGAGAGCCATTGCAAAGCTTCGACATCAAAATTTAGTAAAAATCCGAGGATTCTTCTGGGGAGAAGACGAGAAGCTCATCATCTACGACTATGTCTCCAATGGCTGCCTTGCATCCTCCATCCACAGAAAACCGAGTTCATCGTCTTCTTCCCAGAGCCATTTATCATTCGAAACCCGACTAAAAATCGCAAGAGGAATCGCTCGAGGACTGACCTTCATCCACGACAAGAAGCACGTCCATGGCAATCTCAAGCCGTCCAACATCCTCCTCAACGCCGATATGGAGCCGTTAATCACCGATCTCGGCCTCGACAAGCTCCTCATTAGCGGCTCCAAAATCGCTCTTACCTCCGCCTCCACCCGAAACTTCGGCAGCCACAGATCTACACCCAATCGCGAGCAACAAGAGAGCAACGTCGGTAGCGCAATTAGCGGCGGAAGCCCGGGCGTGAGCTTGGGATCGGCATACCAGGCGCCGGAATCGCTGAGGAATCTGAAACCGAGCCCTAAATGGGACGTGTACTCGTTCGGAGTGATCTTGCTGGAGATTCTGAGCGGGAGAATCGTGACGGAGAGGGAGGCGAGTCAATGGAGCGGCGGTGATGATGAAGTACGGATGAAGAAGATGATCGATTTGGTGATCAGAGAGGAAGTGGAAGGGAAAGAGGAAGCGATGATGGGGATTTTTAGATTAGGGTTTAGGTGCGTTTGTTTCGTGCCTCAGAAGAGACCAACCATGAAAGAAGCTCTGCAACAACTTGATAGAATTTCTTCCTCCATTTCTTCTTCACGCTAA 2343 49.64 MNSITTNLALFWSFAFFFHFLLRSPSLALNGDATLLISLKRSILGDPLNVLANWNFNDDTPCSWRGVTCTDLQTDGGGWTDFLRVTALSLPDSQLLGSIPDELGMIEHLRLLDLSGNFFNGSLPVSIFNASELQILSLSNNVISGELPVAIGGLRSLQVLNLSDNALAGKVPGNLTALRNLTVVSLRSNYFTGEIPGNFSSTEVLDLSSNLLNGSLPADFGGEKLRYLNFSYNKISSSIPLEFAKKIPANATMDLSFNNLTGVIPQSTALLNQKTEAFAGNEDLCGKPLKHLCSIPSSLTTPPNVSDSSSSSPAIAAIPKTIGAIPATQSLGGPNGTQTPPPRNTMKPITIAAIAVGDLAGVAILAVVILYVYHHQKQKNPNSKTPKSTEKKPPIGSQQTLQTNQKKPSSVLFCLPTKGEETSEATSSSDGEEQRDKPSTTHDGENRESKKNGVLVTVDVETELELETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDSGIESFKDFETQVRAIAKLRHQNLVKIRGFFWGEDEKLIIYDYVSNGCLASSIHRKPSSSSSSQSHLSFETRLKIARGIARGLTFIHDKKHVHGNLKPSNILLNADMEPLITDLGLDKLLISGSKIALTSASTRNFGSHRSTPNREQQESNVGSAISGGSPGVSLGSAYQAPESLRNLKPSPKWDVYSFGVILLEILSGRIVTEREASQWSGGDDEVRMKKMIDLVIREEVEGKEEAMMGIFRLGFRCVCFVPQKRPTMKEALQQLDRISSSISSSR 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2417923 2421106 + CmaCh04G004740.1 Cma04g00474 291555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00474 780 Gene3D Ribonuclease Inhibitor 198 295 IPR032675 -
Cma04g00474 780 MobiDBLite consensus disorder prediction 377 454 - -
Cma04g00474 780 ProSiteProfiles Protein kinase domain profile. 471 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00474 780 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 24 773 - -
Cma04g00474 780 MobiDBLite consensus disorder prediction 636 662 - -
Cma04g00474 780 SUPERFAMILY L domain-like 31 291 - -
Cma04g00474 780 Gene3D Ribonuclease Inhibitor 29 197 IPR032675 -
Cma04g00474 780 SUPERFAMILY Protein kinase-like (PK-like) 476 769 IPR011009 -
Cma04g00474 780 MobiDBLite consensus disorder prediction 377 411 - -
Cma04g00474 780 MobiDBLite consensus disorder prediction 428 454 - -
Cma04g00474 780 Pfam Leucine rich repeat 108 167 IPR001611 GO:0005515
Cma04g00474 780 ProSiteProfiles Leucine-rich repeat profile. 224 245 IPR001611 GO:0005515
Cma04g00474 780 Pfam Protein kinase domain 477 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00474 780 Gene3D Transferase(Phosphotransferase) domain 1 547 779 - -
Cma04g00474 780 MobiDBLite consensus disorder prediction 325 344 - -
Cma04g00474 780 MobiDBLite consensus disorder prediction 328 344 - -
Cma04g00474 780 Gene3D Phosphorylase Kinase; domain 1 438 546 - -
Cma04g00474 780 PANTHER OS04G0122200 PROTEIN 24 773 - -
Cma04g00474 780 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00491 Cma-Chr2:2599082 Cma04g00474 Cma-Chr4:2417923 0 dispersed
Cma04g00474 Cma-Chr4:2417923 Cma20g00971 Cma-Chr20:4949033 0 dispersed
Cma16g00345 Cma-Chr16:1611109 Cma04g00474 Cma-Chr4:2417923 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68465 PF00069 Pkinase 3.90E-31 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00474 - - cmax:111478916 1430.62