Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g00476 | ATGGCAATGCATCGCTATGAGCCAGCCGACGATGAAGCCCAAACCCATTTGATTTCGCTCGATTCTCTGTTTTGCGAGGAGGAGAAATGGGAGGAGGAGGAGGAGGATGAAGATGAGCTAGAACAGACCCATCAAGCCCATGTTTTTTCTTTGGATGTTTTGGAGGAAGATCTATTTGGGGAAGATGAACGCCTTCTCTCCTTGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCAAGCTTGAACCTCTGTTAATGGATCCTTCTGTCTCTGCTGCTCGTTCTTCATCTGTGGAGTGGATGCTTAAAGTTAAATCCCATTATGGGTTCTCGTCTCTCACTGCAATTTTGGCCGTTGCTTATTTCGACAGGTTCCTCTCGAGCTTTCATTTTAGAAGTGACAAGCCATGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCGTTGGCGGCTAAAGTGGAGGAGGTTGAAGTTCCTCTGCTACTTGACCTTCAAGTGGAGGATGCGAAATTTGTGTTTGAGGCCAAAACCATTCAGCGAATGGAGCTTTTAGTGCTGTCAACTCTTCAATGGAGGATGCATTTGGTTACTTCGTATTCATATCTTGACAACATTGTAAGAAGGCTTGGGTTAAAGACCAATCTTCATTTGGAGTTCTTCAAGCGTTCTGAGAATCTCCTCCTTTCTCTTCTCTCAGATTCAAGATTTGTGGGTTATCTTCCATCTGTCTTGGCAAGTGCAACAATGATGAACATTATAGAACAGATTGAACCCCATAAGTCAATGGAGCACCAAGATCATCTTCTGGGTGTTCTTAAAATGAGCAAGGACAAAGTGCTAGGCTGTTACAATCTTGTAGTGGAGCATTCAAAGGCATGTAGCAATGGCTTATATCATTCCAACAATCCCCACAAGCGGAAGTACGAACATCATCAAGCTCCTGATAGCCCAAATGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCATGGGCATTGAGAGCAGCAGCATCAGTTTGTTCTTCACCTGAACCATCTTTCAAGAAGAACAAAACTGAAGAGCCAAGAATGTTATATCATTCTCTGAACAGGAGGGTCTGTTTGGACATTGTTGGCAGCCCTTCTTAG | 1143 | 44.18 | MAMHRYEPADDEAQTHLISLDSLFCEEEKWEEEEEDEDELEQTHQAHVFSLDVLEEDLFGEDERLLSLLSKETEQLKQSNLKLEPLLMDPSVSAARSSSVEWMLKVKSHYGFSSLTAILAVAYFDRFLSSFHFRSDKPWMNQLVAVTCLSLAAKVEEVEVPLLLDLQVEDAKFVFEAKTIQRMELLVLSTLQWRMHLVTSYSYLDNIVRRLGLKTNLHLEFFKRSENLLLSLLSDSRFVGYLPSVLASATMMNIIEQIEPHKSMEHQDHLLGVLKMSKDKVLGCYNLVVEHSKACSNGLYHSNNPHKRKYEHHQAPDSPNGVIDAGFSSDSSNDSWALRAAASVCSSPEPSFKKNKTEEPRMLYHSLNRRVCLDIVGSPS | 380 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2429635 | 2431846 | - | CmaCh04G004760.1 | Cma04g00476 | 291557 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g00476 | 380 | Pfam | Cyclin, C-terminal domain | 198 | 314 | IPR004367 | - | |
| Cma04g00476 | 380 | ProSitePatterns | Cyclins signature. | 96 | 127 | IPR006671 | - | |
| Cma04g00476 | 380 | PANTHER | CYCLIN-D3-2 | 14 | 361 | - | - | |
| Cma04g00476 | 380 | SMART | Cyclin_C_2 | 198 | 334 | IPR004367 | - | |
| Cma04g00476 | 380 | Gene3D | - | 197 | 286 | - | - | |
| Cma04g00476 | 380 | CDD | CYCLIN | 102 | 188 | IPR013763 | - | |
| Cma04g00476 | 380 | SMART | cyclin_7 | 101 | 189 | IPR013763 | - | |
| Cma04g00476 | 380 | SMART | cyclin_7 | 202 | 290 | IPR013763 | - | |
| Cma04g00476 | 380 | MobiDBLite | consensus disorder prediction | 305 | 324 | - | - | |
| Cma04g00476 | 380 | Gene3D | - | 92 | 196 | - | - | |
| Cma04g00476 | 380 | PANTHER | CYCLINS | 14 | 361 | IPR039361 | - | |
| Cma04g00476 | 380 | SUPERFAMILY | Cyclin-like | 62 | 196 | IPR036915 | - | |
| Cma04g00476 | 380 | Pfam | Cyclin, N-terminal domain | 93 | 195 | IPR006671 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g00476 | Cma-Chr4:2429635 | Cma07g00683 | Cma-Chr7:3002281 | 4.62E-88 | dispersed | |
| Cma01g01813 | Cma-Chr1:12047797 | Cma04g00476 | Cma-Chr4:2429635 | 1.83E-74 | wgd | |
| Cma11g01728 | Cma-Chr11:11487243 | Cma04g00476 | Cma-Chr4:2429635 | 3.16E-81 | wgd | |
| Cma12g00567 | Cma-Chr12:2965391 | Cma04g00476 | Cma-Chr4:2429635 | 8.17E-91 | wgd | |
| Cma16g00347 | Cma-Chr16:1632612 | Cma04g00476 | Cma-Chr4:2429635 | 0 | wgd | |
| Cma19g00585 | Cma-Chr19:6507822 | Cma04g00476 | Cma-Chr4:2429635 | 9.05E-82 | wgd | |
| Cma04g00476 | Cma-Chr4:2429635 | Cma05g00163 | Cma-Chr5:698112 | 4.66E-94 | wgd | |
| Cma04g00476 | Cma-Chr4:2429635 | Cma09g00261 | Cma-Chr9:1092895 | 1.25E-89 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g00476 | K14505 | - | csv:101221213 | 572.007 |