Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00476 ATGGCAATGCATCGCTATGAGCCAGCCGACGATGAAGCCCAAACCCATTTGATTTCGCTCGATTCTCTGTTTTGCGAGGAGGAGAAATGGGAGGAGGAGGAGGAGGATGAAGATGAGCTAGAACAGACCCATCAAGCCCATGTTTTTTCTTTGGATGTTTTGGAGGAAGATCTATTTGGGGAAGATGAACGCCTTCTCTCCTTGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCAAGCTTGAACCTCTGTTAATGGATCCTTCTGTCTCTGCTGCTCGTTCTTCATCTGTGGAGTGGATGCTTAAAGTTAAATCCCATTATGGGTTCTCGTCTCTCACTGCAATTTTGGCCGTTGCTTATTTCGACAGGTTCCTCTCGAGCTTTCATTTTAGAAGTGACAAGCCATGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCGTTGGCGGCTAAAGTGGAGGAGGTTGAAGTTCCTCTGCTACTTGACCTTCAAGTGGAGGATGCGAAATTTGTGTTTGAGGCCAAAACCATTCAGCGAATGGAGCTTTTAGTGCTGTCAACTCTTCAATGGAGGATGCATTTGGTTACTTCGTATTCATATCTTGACAACATTGTAAGAAGGCTTGGGTTAAAGACCAATCTTCATTTGGAGTTCTTCAAGCGTTCTGAGAATCTCCTCCTTTCTCTTCTCTCAGATTCAAGATTTGTGGGTTATCTTCCATCTGTCTTGGCAAGTGCAACAATGATGAACATTATAGAACAGATTGAACCCCATAAGTCAATGGAGCACCAAGATCATCTTCTGGGTGTTCTTAAAATGAGCAAGGACAAAGTGCTAGGCTGTTACAATCTTGTAGTGGAGCATTCAAAGGCATGTAGCAATGGCTTATATCATTCCAACAATCCCCACAAGCGGAAGTACGAACATCATCAAGCTCCTGATAGCCCAAATGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCATGGGCATTGAGAGCAGCAGCATCAGTTTGTTCTTCACCTGAACCATCTTTCAAGAAGAACAAAACTGAAGAGCCAAGAATGTTATATCATTCTCTGAACAGGAGGGTCTGTTTGGACATTGTTGGCAGCCCTTCTTAG 1143 44.18 MAMHRYEPADDEAQTHLISLDSLFCEEEKWEEEEEDEDELEQTHQAHVFSLDVLEEDLFGEDERLLSLLSKETEQLKQSNLKLEPLLMDPSVSAARSSSVEWMLKVKSHYGFSSLTAILAVAYFDRFLSSFHFRSDKPWMNQLVAVTCLSLAAKVEEVEVPLLLDLQVEDAKFVFEAKTIQRMELLVLSTLQWRMHLVTSYSYLDNIVRRLGLKTNLHLEFFKRSENLLLSLLSDSRFVGYLPSVLASATMMNIIEQIEPHKSMEHQDHLLGVLKMSKDKVLGCYNLVVEHSKACSNGLYHSNNPHKRKYEHHQAPDSPNGVIDAGFSSDSSNDSWALRAAASVCSSPEPSFKKNKTEEPRMLYHSLNRRVCLDIVGSPS 380
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 2429635 2431846 - CmaCh04G004760.1 Cma04g00476 291557
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00476 380 Pfam Cyclin, C-terminal domain 198 314 IPR004367 -
Cma04g00476 380 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Cma04g00476 380 PANTHER CYCLIN-D3-2 14 361 - -
Cma04g00476 380 SMART Cyclin_C_2 198 334 IPR004367 -
Cma04g00476 380 Gene3D - 197 286 - -
Cma04g00476 380 CDD CYCLIN 102 188 IPR013763 -
Cma04g00476 380 SMART cyclin_7 101 189 IPR013763 -
Cma04g00476 380 SMART cyclin_7 202 290 IPR013763 -
Cma04g00476 380 MobiDBLite consensus disorder prediction 305 324 - -
Cma04g00476 380 Gene3D - 92 196 - -
Cma04g00476 380 PANTHER CYCLINS 14 361 IPR039361 -
Cma04g00476 380 SUPERFAMILY Cyclin-like 62 196 IPR036915 -
Cma04g00476 380 Pfam Cyclin, N-terminal domain 93 195 IPR006671 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00476 Cma-Chr4:2429635 Cma07g00683 Cma-Chr7:3002281 4.62E-88 dispersed
Cma01g01813 Cma-Chr1:12047797 Cma04g00476 Cma-Chr4:2429635 1.83E-74 wgd
Cma11g01728 Cma-Chr11:11487243 Cma04g00476 Cma-Chr4:2429635 3.16E-81 wgd
Cma12g00567 Cma-Chr12:2965391 Cma04g00476 Cma-Chr4:2429635 8.17E-91 wgd
Cma16g00347 Cma-Chr16:1632612 Cma04g00476 Cma-Chr4:2429635 0 wgd
Cma19g00585 Cma-Chr19:6507822 Cma04g00476 Cma-Chr4:2429635 9.05E-82 wgd
Cma04g00476 Cma-Chr4:2429635 Cma05g00163 Cma-Chr5:698112 4.66E-94 wgd
Cma04g00476 Cma-Chr4:2429635 Cma09g00261 Cma-Chr9:1092895 1.25E-89 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00476 K14505 - csv:101221213 572.007