Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00481 ATGGCGGCTCAGGTGCAAGCTCAGCCTCAAAATTCCATTTCCGGCATCAATCCGGCGGGAAATGGTGGTGCAAATTTTGTGACTACTTCTTTGTATGTCGGAGATCTGGACCAGAATGTCACGGATTCGCAGCTTTATGATATATTTAATCAGTTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGGGACTTGACGACCCGGCGATCTCTCGGCTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTTCCCCACTAAATGGAAAACCTATTAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCATAAAGCTCTACATGATACATTTTCGGCATTTGGTAGTATCCTTTCTTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGCTCTGAAAGCTATTGAGAAGTTGAACGGTATGCTGTTGAATGATAAACAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATAGTTCTGTTGGCAAATCCAAATTTAACAATGTGTTTGTCAAGAATCTTTCTGAGACAACTACGGAAGAAGATTTGAACAAGGTTTTTTCTGAATTTGGGACAATCACCAGTATCGTTGTGATGAGGGATGCTGATGGCAAATCAAAATGCTTTGGATTTGTGAATTTTGAAAACACTGACGATGCTGCTAGGGCAGTTGATGCCCTCAATGGAAATATATTTGATGATAAGGAGTGGTATGTTGGGAGAGCACAGAAAAAATCTGAAAGAGAAGTAGAATTGAAGAACCGGTTTGAACAAACCATGAAAGAGGCAGCTGACAAGTTCCAGGGGGCAAACTTGTACATTAAAAATTTAGATGATAGCATTAGTGATGATAAGCTTAAGGAGGTTTTTGCTCCGTTTGGCACTATCACCTCGTGCAAGGTTGTCATGCGTGACCCCAATGGTGTGAGCAGAGGTTCTGGATTTGTTGCATTTTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATAGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGAGGAAAGAAGATAGAAGGGCCAGATTGCAGGCTCAGTTCTCTCAAATACGACCGGTTCCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATCTATCCCCCTGGTGGTCCAGGTATCGGACAGCAAATGTTTTATGGTCAAGGTCCTCCTACAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCCGGTGGAGGTCCAATGCCAAATTTCTTTGTCCCAATGGTTCAACAGGGTCAGCAAGGGCCGCGTCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACCCAGCAGCCTGTTTCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTATCCCCCAGGAAGAGGTCTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGACATGGGTGGTATGCCGTTGCGTGATGCATCCCTCTCCTCTCAACCTGTCCCTGTAGGTGCTCTGGCATCTGCTTTGGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTAGTGGAACAATTGGAGCCAGACAACGCAGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTCTTGCATTTACTCGAGTCCCCGGAGGCTTTGAAGGCAAAAGTAGCTGAGGCTATGGAGGTTTTGAGGAATGTAGCTGCTGCAACACAGCAGCAGCAAGCAGGCAATGCAGCAGCTGATCAGCTAGCCTCTCTGTCGCTCACTGAGAACCTCGTGTCTATCCATGTGCGATACGATGACTTATTTGTGGAGACCACGCTTTCTGAACCCCTAGCAATGGCGGCTCCGATCGAATCGGTGCAATGTTTCGGACGCAAGAAGACGGCGGTGGCCGTCACCTACTGCAAACGCGGCAGGGGTTTGATTAAGATCAATGGCTGTCCAATCGAGCTTGTTGAGCCAGAGATCTTGCGCTTCAAGGCCTACGAGCCAATCCTCCTCCTTGGACGTCACCGTTTCTCTGGTGTCGATATGCGCATCAGAGTGAAGGGTGGAGGTCACACCTCGCAGATCTACGCCATCCGTCAGAGTATTGCCAAGGCTCTTGTTGCCTTCTACCAGAAGTACGTGGACGAGCAGAGCAAGAAGGAGATTAAAGACATTCTGGTTAGGTATGATAGGACTTTGCTTGTCGCTGATCCTAGGCGCTGTGAGCCCAAGAAATTTGGTGGTCGTGGTGCTCGTGCTAGGTTCCAGAAATCATACCGTTGA 2463 47.38 MAAQVQAQPQNSISGINPAGNGGANFVTTSLYVGDLDQNVTDSQLYDIFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFSPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDSSVGKSKFNNVFVKNLSETTTEEDLNKVFSEFGTITSIVVMRDADGKSKCFGFVNFENTDDAARAVDALNGNIFDDKEWYVGRAQKKSEREVELKNRFEQTMKEAADKFQGANLYIKNLDDSISDDKLKEVFAPFGTITSCKVVMRDPNGVSRGSGFVAFSTPEEASRALMEMNGKIVVSKPLYVALAQRKEDRRARLQAQFSQIRPVPMAASVAPRMPIYPPGGPGIGQQMFYGQGPPTMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGPRPGGRRAGAVQQTQQPVSMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDASLSSQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAATQQQQAGNAAADQLASLSLTENLVSIHVRYDDLFVETTLSEPLAMAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2449726 2455953 + CmaCh04G004810.1 Cma04g00481 291562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00481 820 MobiDBLite consensus disorder prediction 487 501 - -
Cma04g00481 820 Gene3D - 119 197 IPR012677 -
Cma04g00481 820 Gene3D - 198 291 IPR012677 -
Cma04g00481 820 SUPERFAMILY Ribosomal protein S5 domain 2-like 683 820 IPR020568 -
Cma04g00481 820 SMART rrm2_1 118 190 IPR003954 GO:0003676
Cma04g00481 820 SMART rrm2_1 209 281 IPR003954 GO:0003676
Cma04g00481 820 SMART rrm2_1 312 385 IPR003954 GO:0003676
Cma04g00481 820 SMART rrm2_1 30 103 IPR003954 GO:0003676
Cma04g00481 820 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 631 IPR002004 GO:0003723
Cma04g00481 820 SUPERFAMILY PABC (PABP) domain 496 641 IPR036053 GO:0003723
Cma04g00481 820 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Cma04g00481 820 CDD RRM2_I_PABPs 115 191 IPR045305 -
Cma04g00481 820 Gene3D - 292 398 IPR012677 -
Cma04g00481 820 MobiDBLite consensus disorder prediction 475 503 - -
Cma04g00481 820 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Cma04g00481 820 SMART poly_2 566 629 IPR002004 GO:0003723
Cma04g00481 820 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 627 IPR006515 GO:0003723
Cma04g00481 820 Pfam Poly-adenylate binding protein, unique domain 562 626 IPR002004 GO:0003723
Cma04g00481 820 CDD RRM1_I_PABPs 30 109 - -
Cma04g00481 820 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Cma04g00481 820 CDD RRM4_I_PABPs 310 389 - -
Cma04g00481 820 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Cma04g00481 820 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Cma04g00481 820 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Cma04g00481 820 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 382 IPR000504 GO:0003723
Cma04g00481 820 CDD RRM3_I_PABPs 207 286 - -
Cma04g00481 820 ProSitePatterns Ribosomal protein S9 signature. 748 766 IPR020574 GO:0003735|GO:0005840|GO:0006412
Cma04g00481 820 Gene3D - 676 820 IPR014721 -
Cma04g00481 820 SUPERFAMILY RNA-binding domain, RBD 208 393 IPR035979 GO:0003676
Cma04g00481 820 PANTHER RNA BINDING PROTEIN 18 636 - -
Cma04g00481 820 SMART rrm1_1 30 103 IPR000504 GO:0003723
Cma04g00481 820 SMART rrm1_1 209 281 IPR000504 GO:0003723
Cma04g00481 820 SMART rrm1_1 312 385 IPR000504 GO:0003723
Cma04g00481 820 SMART rrm1_1 118 190 IPR000504 GO:0003723
Cma04g00481 820 Gene3D - 550 631 - -
Cma04g00481 820 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Cma04g00481 820 PANTHER POLYADENYLATE-BINDING PROTEIN 18 636 - -
Cma04g00481 820 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 389 IPR000504 GO:0003723
Cma04g00481 820 Pfam Ribosomal protein S9/S16 688 820 IPR000754 GO:0003735|GO:0005840|GO:0006412
Cma04g00481 820 Gene3D - 1 118 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00481 Cma-Chr4:2449726 Cma15g00568 Cma-Chr15:2660471 0 dispersed
Cma14g00804 Cma-Chr14:4068116 Cma04g00481 Cma-Chr4:2449726 5.18E-06 dispersed
Cma16g00352 Cma-Chr16:1662927 Cma04g00481 Cma-Chr4:2449726 1.02E-82 dispersed
Cma18g01339 Cma-Chr18:10199527 Cma04g00481 Cma-Chr4:2449726 9.38E-09 dispersed
Cma04g00510 Cma-Chr4:2607841 Cma04g00481 Cma-Chr4:2449726 1.93E-97 transposed
Cma11g01739 Cma-Chr11:11541978 Cma04g00481 Cma-Chr4:2449726 0 wgd
Cma16g00351 Cma-Chr16:1656513 Cma04g00481 Cma-Chr4:2449726 0 wgd
Cma19g00596 Cma-Chr19:6565911 Cma04g00481 Cma-Chr4:2449726 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00481 K13126 - csv:101219802 1148.27