Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00485 ATGCCTGGAAGTGTTGTTGTTGAGCCCTTGGATTTGAGCGTGCAGATTCCTTACCATTTCAGGTGCCCGATTTCTCTCGAGCTTATGCGCGATCCGGTTACGGTTAGCACTGGCCAGACCTATGACCGTTCTAGTATTGAGTCATGGGTGGCCACCGGCAACACTACGTGTCCGGTCACTAGGGCTCCGCTTACGGAGTTTACGCTCATCCCTAACCATACGTTGCGACGCCTCATCCAGGAGTGGTGTGTTGCGAATCGGTCTTATGGTGTTGAGCGGATTCCGACACCGAAGCAACCAGCGGATCCGTCTTTGGTTCGGTCTCTGCTTGGCCAAGCTTCGTCGAAATCGAGTGGTTCGAGTTCGAGAATCTCGGCTGTGCGGCGGTTGAAAGGACTTGCTCGTGACTCGGAGAAGAATCGGTCGTTGATTTCTTCTCTGAATGCTCGTGAAATTCTTATTGATGTTGTGTTTTCGAATTCGGATTCGGATTCGGTTTCTCCTGATTTGAGCCGCGAATCGCTCGCGTTGCTTGTGATGTTGCCGCTCACGGAATCTGAGTGCGTTCTCGTTGCGTCTGATCCGCAACGGATTGGTTACCTGTCACATCTTCTTTTTGATTCTTCGATTGAAGTCCGAATCAATGCCGCTGCGTTGATTGAAATCGTGATTGCAGGAACTCGAGCGTCCGAGCTTCGAGGACAAATTTGCGCTATCGACGAATTATTCGAAGGCGTGGTCGAAATTCTCAGAGATCCAACGGCGTATCCGCGAGCTGTGAAGGTCGGAGTTAAGGCCTTGTTCGCTCTCTGTTTAGTGAAACAAACCAGGCACAAGGCGGTTTCCGCCGGCGCCGCCGAGATTCTCATCGACCGGTTCCCCGATTTGGAGAAGTACGACGCAGAGAGAGCCCTAGCAACAATCGAACTCATTTGCAGAATTCCAACTGGTTACGACGCGTTTGCCGCTCACGCGCTCACGGTTCCGCTTTTGGTGAAAGTCATTCTGAAGATCTCAGACCGAGCGACGGAATCAGCAGTCGGAGCTCTGGTGTCGCTGTGCTCGGCGTCGGAGGAGAACCGACGGGAAGCGGTGGCAGCAGGGATTTTTACACAGTTGTTGTTGCTGGTGCAAAGCGATTGTACGGATCGAGTTAAACGGAAATCCCAAGTGCTGCTGAAGCTTCTTCGAGATTCATGGCCGCAGGATTCCGTTGGAAACTCGGACGACTACGGTTGCAGTGAAATTGTGATACCGTTTTATTAA 1266 51.97 MPGSVVVEPLDLSVQIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTEFTLIPNHTLRRLIQEWCVANRSYGVERIPTPKQPADPSLVRSLLGQASSKSSGSSSRISAVRRLKGLARDSEKNRSLISSLNAREILIDVVFSNSDSDSVSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRGQICAIDELFEGVVEILRDPTAYPRAVKVGVKALFALCLVKQTRHKAVSAGAAEILIDRFPDLEKYDAERALATIELICRIPTGYDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGIFTQLLLLVQSDCTDRVKRKSQVLLKLLRDSWPQDSVGNSDDYGCSEIVIPFY 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2469383 2470648 - CmaCh04G004850.1 Cma04g00485 291566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00485 421 Gene3D - 92 407 IPR011989 -
Cma04g00485 421 CDD RING-Ubox_PUB 20 61 IPR045210 -
Cma04g00485 421 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 417 - -
Cma04g00485 421 Pfam U-box domain 16 87 IPR003613 GO:0004842|GO:0016567
Cma04g00485 421 SUPERFAMILY ARM repeat 106 396 IPR016024 -
Cma04g00485 421 ProSiteProfiles U-box domain profile. 15 89 IPR003613 GO:0004842|GO:0016567
Cma04g00485 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 91 IPR013083 -
Cma04g00485 421 PANTHER WDSAM1 PROTEIN 7 417 IPR045185 GO:0061630
Cma04g00485 421 SMART Ubox_2 19 82 IPR003613 GO:0004842|GO:0016567
Cma04g00485 421 SUPERFAMILY RING/U-box 13 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01775 Cma-Chr1:11908140 Cma04g00485 Cma-Chr4:2469383 2.79E-42 dispersed
Cma02g00638 Cma-Chr2:3845480 Cma04g00485 Cma-Chr4:2469383 2.97E-49 dispersed
Cma04g00485 Cma-Chr4:2469383 Cma20g00146 Cma-Chr20:723481 9.31E-62 dispersed
Cma05g00129 Cma-Chr5:572674 Cma04g00485 Cma-Chr4:2469383 1.11E-36 dispersed
Cma09g00639 Cma-Chr9:3014929 Cma04g00485 Cma-Chr4:2469383 2.17E-21 dispersed
Cma12g00605 Cma-Chr12:3181039 Cma04g00485 Cma-Chr4:2469383 6.38E-41 dispersed
Cma04g00485 Cma-Chr4:2469383 Cma04g00081 Cma-Chr4:403222 2.51E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00485 - - csv:101219319 744.962