Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00487 ATGGCGGCAATCGCAGTGAGTAGAGCTTTGTTTCTAATGGGGTTTCTTCTGTTTCTTCAAGAAACAATGGCGGATTGTCCCTTGAACTTGAGTGGATCAAACTTTACTTTAGCTGCTTCTATTTGTTCTAACCCCAATGAAAGAGGGAAATGCTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTTGCTCAGCTTGCTAATGTGACTGGTGAACTAGGAGTTTCTTCAAACTTGTCTAACATTTGCCTGCAATCATTGTTTGAAACTATGGAACTGTATGGAGTTCCTAGAAATGCCACTGGTTTCTGTGGGGTTGGGACAAAGATTACAGTGAATTACACGTGTAGAGGTCGAGAAACTGTCGAACAAATGCTGGAATCTCCAAGTTTCTCAAATGTTAGTGACAATTGTGAATTGCCTCTCTTGGAGGAAAGTGTTTGCAGGAAGTGTATCAATGCTGGGATTTTGTATCTACGTAATCTGATTGGAAGAGAAGACAATATAACGTTAAATACTTGTCGCGACGCGACGTTTGTTGCACTTGCTAGCCATCTTGATACTGCTTCAGTCGTTGATCTTGCAACATGCTTCTTTGGAGTTCAAGGTCTTGACAAGCCTCCAGCTCCATCCCCTTCTTTTGCTCCCCCAGATATTGCCCCAAGTCCATCAGCTGCTGCAAGTCCGGGGCCAACGATACCAGGTGTTTCCGACGATAAAAGTCATAAACGTCATTCCTACCATCTAACATTAGTGGCGGGTATTGGCATTGCGGTGACCGTGTCTTCCATATTGATTCTGGTCGTCTTGATCGTGCTGATTCGAAGGAAAAACAGAGAGCTAAAGGATTCTGATATGGCAGATGGAAAATCATCGAAATTCTTGCCTTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCTACGTTTAAAAAGTTCAGCTATAAAGAGATCAAGAAGGCAACAGATGGATTTAGTACAACAATTGGACAAGGAGGATATGGAACGGTTTATAAAGCTCAATTCAGTGATGACTTAGTGGTAGCTGTGAAGAGGATGAACAAAGTCTCCGAGCAGGGGGAGGATGAATTTGGTCGAGAAATCGAGCTGCTCGCAAGATTACATCACAGACACCTGGTTGCTTTAAGAGGCTTTTGTGTTGATAAGCATGAACGGTTTCTTGTGTACGAGTATATGACTAATGGAAGCTTGAAGGATCATCTTCATGGTCCTGGCAAGACACCTCTAAGTTGGCAGACGAGAATACAAATTGCCATCGACGTCGCCAATGCTCTGGAGTACCTTCATTATTATTGTGATCCCCCATTATGCCATAGAGACATTAAGTCCAGCAACATTTTGCTGGATGAGAACTTTGTTGCTAAGATTGCAGATTTCGGCCTTGCGCATGCTTCAGAGGGCGGTTCTATTTTCTTTGAACCCGTAAACACCGACATCTGTGGAACGCCAGGTTATATGGATCCCGAGTATGTTATCACGCAAGAGCTTACCGAGAAAAGTGATATATACAGCTATGGCGTGCTGCTCCTGGAAATAGTTACGGGCAGGCGTGCTATACAAGATGGTAAGAATTTAGTAGAATGGTCTCAGGTGTACATGGTTCCAGATTCAAGGATATCGGAACTAGTAGATCCAAGGATCAAGAGTTGTTTCGACTTAGAACAACTCCACACAGTCGTGTCAATTGTGAGATGGTGCACCGAGGGAGAAGGCAGGGTAAGGCCGTCAATTAAACAGGTGCTTCGAGTATTGTACGAGAGTTCGGACCCGGTGCATCAAGAGCTGGTGGAAGCTGTTGATGAAGAAGAAGAATATGGAGGGAGTGAAGGAAGGCAGAGCATGAGCAGCAGGAGAAAAGGGCATAGAAGTGATGTGATTTTTCACAGTGGAGAAGGAAGGTATCTTGCATCTTCATCAAGCACAACAAAGTCATATTGTAGTAGAAGCTTTTTGCTTGAAACCGGTTCACCACAATCTCCTCCCAATATTTTCTCTGTCACAGATCAATTGTTTTAG 2037 43.69 MAAIAVSRALFLMGFLLFLQETMADCPLNLSGSNFTLAASICSNPNERGKCCRYINAFVAVSVAQLANVTGELGVSSNLSNICLQSLFETMELYGVPRNATGFCGVGTKITVNYTCRGRETVEQMLESPSFSNVSDNCELPLLEESVCRKCINAGILYLRNLIGREDNITLNTCRDATFVALASHLDTASVVDLATCFFGVQGLDKPPAPSPSFAPPDIAPSPSAAASPGPTIPGVSDDKSHKRHSYHLTLVAGIGIAVTVSSILILVVLIVLIRRKNRELKDSDMADGKSSKFLPSRPIKKYQEGPSTFKKFSYKEIKKATDGFSTTIGQGGYGTVYKAQFSDDLVVAVKRMNKVSEQGEDEFGREIELLARLHHRHLVALRGFCVDKHERFLVYEYMTNGSLKDHLHGPGKTPLSWQTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKIADFGLAHASEGGSIFFEPVNTDICGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSQVYMVPDSRISELVDPRIKSCFDLEQLHTVVSIVRWCTEGEGRVRPSIKQVLRVLYESSDPVHQELVEAVDEEEEYGGSEGRQSMSSRRKGHRSDVIFHSGEGRYLASSSSTTKSYCSRSFLLETGSPQSPPNIFSVTDQLF 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2482425 2487479 + CmaCh04G004870.1 Cma04g00487 291568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00487 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Cma04g00487 678 SUPERFAMILY Protein kinase-like (PK-like) 304 592 IPR011009 -
Cma04g00487 678 PANTHER OS01G0750732 PROTEIN 15 673 - -
Cma04g00487 678 Gene3D Transferase(Phosphotransferase) domain 1 399 613 - -
Cma04g00487 678 MobiDBLite consensus disorder prediction 605 629 - -
Cma04g00487 678 CDD STKc_IRAK 329 591 - -
Cma04g00487 678 MobiDBLite consensus disorder prediction 209 228 - -
Cma04g00487 678 Pfam SPARK 24 156 IPR043891 -
Cma04g00487 678 Gene3D Phosphorylase Kinase; domain 1 288 398 - -
Cma04g00487 678 ProSiteProfiles Protein kinase domain profile. 323 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00487 678 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Cma04g00487 678 MobiDBLite consensus disorder prediction 209 241 - -
Cma04g00487 678 SMART serkin_6 323 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00487 678 Pfam Protein kinase domain 327 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00487 678 PANTHER BNAC06G02630D PROTEIN 15 673 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01300 Cma-Chr2:7655356 Cma04g00487 Cma-Chr4:2482425 3.17E-55 dispersed
Cma04g00487 Cma-Chr4:2482425 Cma01g00737 Cma-Chr1:3882381 6.84E-74 dispersed
Cma15g01347 Cma-Chr15:8466818 Cma04g00487 Cma-Chr4:2482425 3.74E-56 dispersed
Cma20g00142 Cma-Chr20:694599 Cma04g00487 Cma-Chr4:2482425 2.05E-59 dispersed
Cma16g00354 Cma-Chr16:1676594 Cma04g00487 Cma-Chr4:2482425 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68466 PF00069 Pkinase 9.60E-51 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00487 - - csv:101219079 1085.09