Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00503 | ATGTCATTCCGAAGTATAGTTCGTGATGTGAGGGATAGCATTGGGAGCTTATCTAGACGGGGTTTCGAGGTCAAGCTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCATTAAACGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAACCTTCCACCTGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAGCACATGGCCTTCACGACGGAACGTCGTTGCCTGTGCTGCGGTATGTCGTTCTTGGAGAGTTATGTGCATGGAGATCGTTAAAGGCCCCGAAATTTGTGGCAAGCTTACCTTCCCTGTGTCACTTAAGCAGCCCGGGCCGCGCGATACGTCGGTACAGTGCTTCATTAAGAGGGATAAATCCAGTCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTCGTCGAAAATGGGAAGTTTCTTCTTGCTGCCAAGCGTACACGAAGAACTACCAGTACAGAGTACGTTATCTCAACGGATGCAGATAACATTTCGAGATCTAGTAGCACGTACATCGGAAAGCTGAGGTCGAATTTTCTTGGCACGAAATTCATTGTCTATGATACTCAACCACCATATGCCGCTGCTCCGCTCCCTCATCCCGGGAAAACTAGCCGTAGATTTTACTCGAAAAAGGTCTCGCCAAAAGTCCCAACTGGCAGTTACAACATAGCCCATATAAGTTACGAACTAAACGTCTTAGGCACACGAGGACCCCGAAGAATGCATTGTATAATGCATTCGATACCAGTAGCAGCTCTCGATGCAGGCGGTACAGTTCCAGGCCAACCCGAGCTCCTCCCACCCAACTCCCTCGACGACTCGTTTCGGAGTGCATCGTTCTCCAAGACACTAGATCATTCCATGGAGTTCAGTAGTGCAAGATTTTCCGAAATCGGCCGGGCAGCATTAGACGGCGACGGAGAGGGAAAGATGAGACCTTTAGTTCTTAAAAACAAGCCCCCAAGATGGCATGAACAGCTGCAATGTTGGTGTCTCAACTTTCGCGGGCGAGTAACCGTTGCATCGGTGAAGAACTTTCAGTTGATCGCCGCAACTCAGCCAGCTGCTGGCGCTCCAACACCGTCTCAACCAGGTCCTCCCGAGCACGACAAGATCATCCTACAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGACTACCGATATCCGCTCTCGGCGTTTCAAGCCTTTGCAATATGCTTGAGTAGCTTTGATACCAAATTGGCTTGTGAATAA | 1287 | 49.18 | MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWANLPPELLYDVIRRLEESESTWPSRRNVVACAAVCRSWRVMCMEIVKGPEICGKLTFPVSLKQPGPRDTSVQCFIKRDKSSLTYHLYLCLSPALLVENGKFLLAAKRTRRTTSTEYVISTDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYAAAPLPHPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVAALDAGGTVPGQPELLPPNSLDDSFRSASFSKTLDHSMEFSSARFSEIGRAALDGDGEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 428 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2572388 | 2574535 | - | CmaCh04G005030.1 | Cma04g00503 | 291584 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00503 | 428 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 428 | - | - | |
Cma04g00503 | 428 | SUPERFAMILY | F-box domain | 45 | 97 | IPR036047 | GO:0005515 | |
Cma04g00503 | 428 | ProSitePatterns | Tub family signature 1. | 350 | 363 | IPR018066 | - | |
Cma04g00503 | 428 | PANTHER | TUBBY-RELATED | 1 | 428 | - | - | |
Cma04g00503 | 428 | Gene3D | Tubby Protein; Chain A | 111 | 428 | IPR025659 | - | |
Cma04g00503 | 428 | ProSitePatterns | Tub family signature 2. | 413 | 428 | IPR018066 | - | |
Cma04g00503 | 428 | Pfam | Tub family | 115 | 423 | IPR000007 | - | |
Cma04g00503 | 428 | PRINTS | Tubby superfamily signature | 170 | 186 | IPR000007 | - | |
Cma04g00503 | 428 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Cma04g00503 | 428 | PRINTS | Tubby superfamily signature | 236 | 263 | IPR000007 | - | |
Cma04g00503 | 428 | PRINTS | Tubby superfamily signature | 332 | 349 | IPR000007 | - | |
Cma04g00503 | 428 | PRINTS | Tubby superfamily signature | 350 | 366 | IPR000007 | - | |
Cma04g00503 | 428 | PRINTS | Tubby superfamily signature | 385 | 404 | IPR000007 | - | |
Cma04g00503 | 428 | PRINTS | Tubby superfamily signature | 406 | 428 | IPR000007 | - | |
Cma04g00503 | 428 | SUPERFAMILY | Tubby C-terminal domain-like | 103 | 428 | IPR025659 | - | |
Cma04g00503 | 428 | Pfam | F-box domain | 54 | 100 | IPR001810 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00503 | Cma-Chr4:2572388 | Cma15g00596 | Cma-Chr15:2826436 | 0 | dispersed | |
Cma07g00481 | Cma-Chr7:2099589 | Cma04g00503 | Cma-Chr4:2572388 | 3.05E-150 | dispersed | |
Cma14g01645 | Cma-Chr14:12300711 | Cma04g00503 | Cma-Chr4:2572388 | 5.90E-150 | dispersed | |
Cma16g00365 | Cma-Chr16:1736649 | Cma04g00503 | Cma-Chr4:2572388 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34774 | PF01167 | Tub | 2.70E-116 | CL0395 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00503 | K19600 | - | csv:101216314 | 833.172 |