Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00503 ATGTCATTCCGAAGTATAGTTCGTGATGTGAGGGATAGCATTGGGAGCTTATCTAGACGGGGTTTCGAGGTCAAGCTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCATTAAACGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAACCTTCCACCTGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAGCACATGGCCTTCACGACGGAACGTCGTTGCCTGTGCTGCGGTATGTCGTTCTTGGAGAGTTATGTGCATGGAGATCGTTAAAGGCCCCGAAATTTGTGGCAAGCTTACCTTCCCTGTGTCACTTAAGCAGCCCGGGCCGCGCGATACGTCGGTACAGTGCTTCATTAAGAGGGATAAATCCAGTCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTCGTCGAAAATGGGAAGTTTCTTCTTGCTGCCAAGCGTACACGAAGAACTACCAGTACAGAGTACGTTATCTCAACGGATGCAGATAACATTTCGAGATCTAGTAGCACGTACATCGGAAAGCTGAGGTCGAATTTTCTTGGCACGAAATTCATTGTCTATGATACTCAACCACCATATGCCGCTGCTCCGCTCCCTCATCCCGGGAAAACTAGCCGTAGATTTTACTCGAAAAAGGTCTCGCCAAAAGTCCCAACTGGCAGTTACAACATAGCCCATATAAGTTACGAACTAAACGTCTTAGGCACACGAGGACCCCGAAGAATGCATTGTATAATGCATTCGATACCAGTAGCAGCTCTCGATGCAGGCGGTACAGTTCCAGGCCAACCCGAGCTCCTCCCACCCAACTCCCTCGACGACTCGTTTCGGAGTGCATCGTTCTCCAAGACACTAGATCATTCCATGGAGTTCAGTAGTGCAAGATTTTCCGAAATCGGCCGGGCAGCATTAGACGGCGACGGAGAGGGAAAGATGAGACCTTTAGTTCTTAAAAACAAGCCCCCAAGATGGCATGAACAGCTGCAATGTTGGTGTCTCAACTTTCGCGGGCGAGTAACCGTTGCATCGGTGAAGAACTTTCAGTTGATCGCCGCAACTCAGCCAGCTGCTGGCGCTCCAACACCGTCTCAACCAGGTCCTCCCGAGCACGACAAGATCATCCTACAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGACTACCGATATCCGCTCTCGGCGTTTCAAGCCTTTGCAATATGCTTGAGTAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 49.18 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWANLPPELLYDVIRRLEESESTWPSRRNVVACAAVCRSWRVMCMEIVKGPEICGKLTFPVSLKQPGPRDTSVQCFIKRDKSSLTYHLYLCLSPALLVENGKFLLAAKRTRRTTSTEYVISTDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYAAAPLPHPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVAALDAGGTVPGQPELLPPNSLDDSFRSASFSKTLDHSMEFSSARFSEIGRAALDGDGEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2572388 2574535 - CmaCh04G005030.1 Cma04g00503 291584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00503 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Cma04g00503 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Cma04g00503 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cma04g00503 428 PANTHER TUBBY-RELATED 1 428 - -
Cma04g00503 428 Gene3D Tubby Protein; Chain A 111 428 IPR025659 -
Cma04g00503 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Cma04g00503 428 Pfam Tub family 115 423 IPR000007 -
Cma04g00503 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cma04g00503 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cma04g00503 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cma04g00503 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cma04g00503 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cma04g00503 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Cma04g00503 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Cma04g00503 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Cma04g00503 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00503 Cma-Chr4:2572388 Cma15g00596 Cma-Chr15:2826436 0 dispersed
Cma07g00481 Cma-Chr7:2099589 Cma04g00503 Cma-Chr4:2572388 3.05E-150 dispersed
Cma14g01645 Cma-Chr14:12300711 Cma04g00503 Cma-Chr4:2572388 5.90E-150 dispersed
Cma16g00365 Cma-Chr16:1736649 Cma04g00503 Cma-Chr4:2572388 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34774 PF01167 Tub 2.70E-116 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00503 K19600 - csv:101216314 833.172