Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00508 ATGGAGATTGATCTATCACTCAAAATTGATCATCACAAACAAGAATTGAACCAAGAACATCAAGAACATCAAGAACAAGACGAACAAGACGAACATGACGAACACGAAGATTATCGAGTTCCAGAAAAAAAGGGAGTTGATGACACTGAAATTCATGTTGCTGCCTCTACTTTGAAAATTTCGGAGTTGCAAATGGAGATGGATCGTATGAAGGAAGAGAACAAGATGTTGAGAAAAGAAGTGGAACAAACCATGAAAGATTACTATGATCTTGAGATGAAAATTGCTATCATTCAACAAAACAATCTCCAAAAAAAGGACTCTCACAACTTTCTACCGAGCCACGAAAATGAAAACAAGAGGGTCGAAGAACCAAACCGAGAGGTCGAGCTCGGAGAAACGGCAAAGAAGAGACGAGTTCGATCGCCATCGAAGGACAACGAAATGAGAGAAAGCAAACTAGGGTTATCATTAGGGCTTAATACAAACAATGATTTGGAAGAAGATAATGATCATAAGGATCAAGAAGAAGAAACAAGAGAAAAGAGCAAAGAACATGTAACATCCAACATGAAGGCAATGCAACAAAGCAAGCCACAAAGGCCTGAGTTGCAAGGAATGGCACCTCCACACAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAAGCTGCCACGATGAACGATGGTTGCCAATGGCGGAAATACGGTCAAAAAATTGCGAAGGGGAATCCATGCCCTCGAGCCTACTATCGTTGCACGGTTGCACCGGGATGCCCCGTTAGAAAACAGGTGCAAAGATGCTTAGAAGACATGTCAATACTGATAACAACGTACGAAGGAACACACAACCATCCGCTCCCTGTCGGAGCCACCGCCATGGCCTCAACAGCTTCGGCAGCCGCTTCGTTTACGCTATTAGACTCCACAAATCTCCCTCTTCCAAACCCTCAAAACCCTAATAATATTCTAAACTCCTCTTCCTATTCTGCAAACCTTAACCACCCCTCCACCGGGCTCCTCCTCAACCTCACGGCAAACAATTTCTACGCTCCGGTGGCCGCCTCCTCCACCTCCGCTGCCCATAATTCCTATTATCAAAGCAACTTTCAAGCTAATCTTTTTAGTCGTCCCCTTGATGGGCGGACTTGGAAATCGGCGGCGGAGGAGAATAAGCAGCCGCTGATGGGGGAGAGTGTGTCGGCCATTGCTTCTGACCCCAAGTTTCGAGTGGCGGTGGCGGAAGCCATTTCGTCGCTCATTAACAAAGACGGCAACCTCACCGCACCCAATTCTGTCAAACGCTCTTCTTTTGGTACCGAGAAGGATGGCGACGGCGGCGATAGCGGCGGCGGGAACAACAATTGGGTTGCCCAATCGCTCTCCACCAATGGTAAAATTTAA 1407 46.27 MEIDLSLKIDHHKQELNQEHQEHQEQDEQDEHDEHEDYRVPEKKGVDDTEIHVAASTLKISELQMEMDRMKEENKMLRKEVEQTMKDYYDLEMKIAIIQQNNLQKKDSHNFLPSHENENKRVEEPNREVELGETAKKRRVRSPSKDNEMRESKLGLSLGLNTNNDLEEDNDHKDQEEETREKSKEHVTSNMKAMQQSKPQRPELQGMAPPHNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFTLLDSTNLPLPNPQNPNNILNSSSYSANLNHPSTGLLLNLTANNFYAPVAASSTSAAHNSYYQSNFQANLFSRPLDGRTWKSAAEENKQPLMGESVSAIASDPKFRVAVAEAISSLINKDGNLTAPNSVKRSSFGTEKDGDGGDSGGGNNNWVAQSLSTNGKI 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2585081 2587490 - CmaCh04G005080.1 Cma04g00508 291589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00508 468 SMART WRKY_cls 228 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g00508 468 SUPERFAMILY WRKY DNA-binding domain 221 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma04g00508 468 Pfam WRKY DNA -binding domain 229 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g00508 468 MobiDBLite consensus disorder prediction 107 214 - -
Cma04g00508 468 MobiDBLite consensus disorder prediction 1 50 - -
Cma04g00508 468 MobiDBLite consensus disorder prediction 426 468 - -
Cma04g00508 468 Coils Coil 53 87 - -
Cma04g00508 468 Coils Coil 9 33 - -
Cma04g00508 468 MobiDBLite consensus disorder prediction 165 188 - -
Cma04g00508 468 Gene3D WRKY domain 213 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma04g00508 468 MobiDBLite consensus disorder prediction 109 152 - -
Cma04g00508 468 ProSiteProfiles WRKY domain profile. 223 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g00508 468 MobiDBLite consensus disorder prediction 453 468 - -
Cma04g00508 468 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 461 IPR044810 GO:0003700
Cma04g00508 468 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 2 461 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00549 Cma-Chr3:5107884 Cma04g00508 Cma-Chr4:2585081 1.32E-49 dispersed
Cma04g00508 Cma-Chr4:2585081 Cma19g00912 Cma-Chr19:8235872 8.68E-59 dispersed
Cma14g01054 Cma-Chr14:5555368 Cma04g00508 Cma-Chr4:2585081 1.44E-26 dispersed
Cma16g00368 Cma-Chr16:1747075 Cma04g00508 Cma-Chr4:2585081 3.38E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34775 PF03106 WRKY 1.80E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00508 - - cmo:103496139 441.81