Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00526 ATGCAGAAAGTGGAATCGATGAAGATTTTCATTACCTTCCTTCTCTGTTTACTCTCTGTAACTTCAGCAGCCAACCCCACCTGCCCAATGGATCTCAACTATGTCCTTAGAATCCCATGGAATGCGACTGATTGCCGAAACCCCTTCTTCCAAGCCACCGCCAAAGCCGCCATGAATGACACCTCCAAAATCCCTTGTTGTCAAACCCTTTTGTCCTTATATGGAATCGCTCTGGCCCAACACCTCAAAGAAACCTCACTTTTCAATCTCCCAGACCTCGCAACCTCCATCTCTTGCCTTCGCGATTACCAATCAAAGCTCTCATCGCTCTCCCTTCCCGGCGACGTTGTTTCGCTTTGCTTCGATCCTTTGCAATTTGTGATATCCGATAATGTCTGTGCAGGTATTCAAACTACTCGAGATTGGGTTTCGAAGCTTGGCAAGAACACGCCGCTCGATTCTGGATGTCGATCGGAACTTGTTGGTCCAAGTTGTGATGCGTGTCTCGCCTCTGGTTTCAAAGTCCAATCGATTCTAACTGGAATTGATGGTAATAAATCTCATTCCAAGGATTGTTTTTACTTCGCTGTTCTTTATGCTGCTGGAATCGTGAATGAATTTGGCCCTGAGGGACGTAGTGCATTAGGTTGCATCTTTAATCTACAATTGACTGAAAATGAATTGAAAAATAAACATCCTGCTCTAGTTTATGGTCTTGTTGCTGCTGCTATTGGAGTATTGATCGTTTTTGTTCTGCTTGGGATTTGCTTTTGGTATTACAAGTGGAAAAAATTAGTCAAGAAATCTAGTTTAGAGTTTGATGTAGAACTGGATGAACAAGGGTCTAGGCCACATGCCAGGCCTAATACTGGATCAATTTGGTTCAAGATTCAGGAGCTTGAGAAGGCCACTGATAACTTTTCTTCAAAAAACTTCATTGGGAGAGGTGGGTTTGGTTTAGTTTACAAAGGGTCATTACCTGATGGAAGTATGGTGGCTGTGAAGAAGGTTATTGAATCAGATTTTCAAGGCAATGCAGAGTTTTGCAATGAGGTTGAAATAATCAGTAATTTGAAGCATAGGAACCTTGTGCCACTTAGAGGTTGCTGTGTGATTGATGGGGATGATGATCATGATGAGAGTGGAAGTGAGAGATATCTTGTTTATGATTACATGCCCAATGGAAACCTTGATGATCATTTGTTTCTTTCACCATTTGATCATGTTGGAACTGTAAAGAAGCCATTGACATGGCCTCAAAGGAAGAACATTATCTTGGATGTGGCAAAAGGCTTAGCTTACCTTCATTATGGAGTGAAGCCTGCCATATATCACAGAGATATCAAGGCAACGAACATATTGCTAGATGCAGATATGAGAGCGAGAGTGGCGGATTTCGGGCTTGCTAAACAGATTAGGGAAGGACAGTCTCATCTAACAACTCGAGTTGCGGGAACTCATGGGTATTTAGCTCCTGAATATGCTCTTTATGGACAATTAACTGAGAAGAGTGATGTTTATAGCTTTGGAGTCGTTGTTTTAGAGATAATGTGTGGGAGGAAAGCTCTTGATTTCTCTTTGTCGTCGTCGCCACGTGCATTTCTGATCACGGATTGGGCTTGGTCGTTGGTGAAAGGTGGGAAAATAGGGGAAACTTTAGATCCTTCTCTGCTGAAAGATGAAGGTTCTAATTCAAATCCAAAAGGCATAATGGAGAGGTTTGTTGCGGTGGGAATTTTATGTTCTCATGTGATGGTGGCTTTGAGGCCTACCATTATGGACGCTTTGAAAATGTTGGAGGGGGACATAGAAGTTCCCCAAATCTCTGATCGGCCAGTGCCTTATGGGCATCCTTCATTTGTTGGCGATGGCAGCAACTTCAGTATATCGCCAACATTGAGCAAGCCTCAAGTGCATAGCGGTGACATGCTCAGATGA 1938 43.09 MQKVESMKIFITFLLCLLSVTSAANPTCPMDLNYVLRIPWNATDCRNPFFQATAKAAMNDTSKIPCCQTLLSLYGIALAQHLKETSLFNLPDLATSISCLRDYQSKLSSLSLPGDVVSLCFDPLQFVISDNVCAGIQTTRDWVSKLGKNTPLDSGCRSELVGPSCDACLASGFKVQSILTGIDGNKSHSKDCFYFAVLYAAGIVNEFGPEGRSALGCIFNLQLTENELKNKHPALVYGLVAAAIGVLIVFVLLGICFWYYKWKKLVKKSSLEFDVELDEQGSRPHARPNTGSIWFKIQELEKATDNFSSKNFIGRGGFGLVYKGSLPDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVIDGDDDHDESGSERYLVYDYMPNGNLDDHLFLSPFDHVGTVKKPLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQIREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDFSLSSSPRAFLITDWAWSLVKGGKIGETLDPSLLKDEGSNSNPKGIMERFVAVGILCSHVMVALRPTIMDALKMLEGDIEVPQISDRPVPYGHPSFVGDGSNFSISPTLSKPQVHSGDMLR 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2664874 2666811 + CmaCh04G005260.1 Cma04g00526 291607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00526 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Cma04g00526 645 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 15 643 - -
Cma04g00526 645 Pfam SPARK 23 193 IPR043891 -
Cma04g00526 645 ProSiteProfiles Protein kinase domain profile. 307 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00526 645 CDD STKc_IRAK 313 601 - -
Cma04g00526 645 SUPERFAMILY Protein kinase-like (PK-like) 285 600 IPR011009 -
Cma04g00526 645 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 15 643 - -
Cma04g00526 645 Gene3D Transferase(Phosphotransferase) domain 1 392 609 - -
Cma04g00526 645 SMART serkin_6 307 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00526 645 ProSitePatterns Protein kinases ATP-binding region signature. 313 336 IPR017441 GO:0005524
Cma04g00526 645 Pfam Protein kinase domain 309 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00526 645 MobiDBLite consensus disorder prediction 626 645 - -
Cma04g00526 645 Gene3D Phosphorylase Kinase; domain 1 272 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00526 Cma-Chr4:2664874 Cma19g01094 Cma-Chr19:9079003 5.90E-77 dispersed
Cma08g00372 Cma-Chr8:2148712 Cma04g00526 Cma-Chr4:2664874 6.93E-109 transposed
Cma16g00381 Cma-Chr16:1820625 Cma04g00526 Cma-Chr4:2664874 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68467 PF00069 Pkinase 1.30E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00526 - - cmax:111479230 1302.73