Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00529 ATGGACGTGGAGTCCTCCCGTTGGTCTCGGGCGGCTGAGAAAGATGGCGGTAACAAGAAGGAAGAGAAGCACGGGAGTGACGAGAAGGACGACGCCGACATGCCGTCGTCGTTGAACCTTAGAGAGCTTTCTAAAGTTATACTTCCACCTTTGGGAGTGTCGAGCTTCACTGATGGAAGTAAATTTAAGGGTAATAAATGGATCATCTCTCCTATGAGTTCAAGATATAGGTGGTGGCAGTCGTTCATGGTGGTCTTGGTTGCTTACTCGGTGTGGGTGTATCCATTGGAAGTGGCGTTCAAGGATGCAATTCCGAAGCGGGAATTATTAATTGCAGACAATTTTGTCGATCTCTTCTTCGCCTTCGACATCTTCCTCACCTTCTTCGTTGCTTACATTGATCATCGGACTCAGCTTCTTGTTCGTGATTCTAAGAAGATAGCTATCAGGTACTTGTCAACATGGTTCTTGATGGATTTGGCATCAACAATCCCATTTGAGACAATTGGATACCTTTTTGTTAGCAACTATAATGGTGGTCTCCCTTATGCCCTCCTGGGATTGCTCAAGTTTTGGCGACTACGACGTGTCAAGCAATTTTTCACAAGGCTAGAGAAGGACATTAGATTCAGCTACTTTTTGGTTCGATGTGCTAGGCTTCTATCTGTTACTTTGTTTTACGTCCACTGTGCCGGATGCCTCTACTACTTGTTGGCTGACAGATATCCAAATGAAGGACAGACCTGGATTGGAACCATGAATCCAAATTTTAAAGAGATTAGCTTTGGAGTGAGATATATTTCAGCCTTGTATTGGTCTATCACCACCATGACGACTGTTGGTTATGGTGATCTTCATGCTGTGAACATTGTAGAGATGATCTTCATCATTTTCTACATGCTCTTCAATCTCGGCTTAACCGCTTACTTGATCGGTAACATGACGAACTTAGTCGTCGAAGGAACTCGTCGCACGATGGAATTTAGAAACAACATCGAAATGGCGTCAAACTTTGTTAACCGTAACCGGCTGCCTTCGAGATTGAAGGAACAGATATTGGCATATATGTGTTTGAGATTCAAGGCAGAGAGCCTAAATCAACAACAGCTGATTGATCAGCTTCCAAAGTCGATATGTAAAAACATCTGTCAGCAATTGTTTTTGCCAACAGTGGAGAAAGTCTACCTCTTCAAGGGTGTCTCAAAGGAAACACTTGCATTGCTGGTAGCAAAGATGAAAGCTGAGTATATACCTCCGAAGGAGGACGTGATTATACATAGCGAAACCCCTGATGAAGTTTATATCATCGTGTCCGGGGAAATCGAAATTATCGACTGTGAGATGGAGCGGGAGCAGATTGTTGGGACACTACAGTGTGGCAGTATGTTTGGGGAAGTTGGAGCACTTTGTTGCAAAAACCAAAATCTTACATACAGAACCAAAACTCTTTCACAGCTCTTGAGGCTTAAAACAAGTATACTACAAGAAGCTATGCATGTCAGGCAAGACGACAGTATGGTCATTGTCAAGAACTTCCATCAGGAAAGGCAGGCCAGCCACAGAATCACCATAGAAGGTTCAGTTGAAAAAGAAACGCCCGCGTTCAATGAAGAAAAGGATCAAAGTTTCAACTGGAAACACTCCATTGAATTAGACTTTGCTAGAGTAAATGTATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGAAGATCCTGGAAAGCTCATCAGATTGCCACATTCAATGGAGGAGCTCAAAAGAGTTGCAGGTGAAAAGCTTGGATTTGATGCAAGAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGACTCCATTGATGTGGTATTAGATAACCAAGGGGGCATTTTCCAGCAAAAACAAAAAGGGAATGCCTCACCAATCATCTTTTTGTACTGA 1926 42.99 MDVESSRWSRAAEKDGGNKKEEKHGSDEKDDADMPSSLNLRELSKVILPPLGVSSFTDGSKFKGNKWIISPMSSRYRWWQSFMVVLVAYSVWVYPLEVAFKDAIPKRELLIADNFVDLFFAFDIFLTFFVAYIDHRTQLLVRDSKKIAIRYLSTWFLMDLASTIPFETIGYLFVSNYNGGLPYALLGLLKFWRLRRVKQFFTRLEKDIRFSYFLVRCARLLSVTLFYVHCAGCLYYLLADRYPNEGQTWIGTMNPNFKEISFGVRYISALYWSITTMTTVGYGDLHAVNIVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNNIEMASNFVNRNRLPSRLKEQILAYMCLRFKAESLNQQQLIDQLPKSICKNICQQLFLPTVEKVYLFKGVSKETLALLVAKMKAEYIPPKEDVIIHSETPDEVYIIVSGEIEIIDCEMEREQIVGTLQCGSMFGEVGALCCKNQNLTYRTKTLSQLLRLKTSILQEAMHVRQDDSMVIVKNFHQERQASHRITIEGSVEKETPAFNEEKDQSFNWKHSIELDFARVNVYKGHPVARKQASCEDPGKLIRLPHSMEELKRVAGEKLGFDARNAVLTNEEGSEIDSIDVVLDNQGGIFQQKQKGNASPIIFLY 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2693113 2698974 + CmaCh04G005290.1 Cma04g00529 291610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00529 641 Pfam KHA, dimerisation domain of potassium ion channel 555 622 IPR021789 -
Cma04g00529 641 Pfam Cyclic nucleotide-binding domain 420 498 IPR000595 -
Cma04g00529 641 MobiDBLite consensus disorder prediction 1 35 - -
Cma04g00529 641 SUPERFAMILY Voltage-gated potassium channels 71 319 - -
Cma04g00529 641 Pfam Ion transport protein 76 325 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma04g00529 641 SMART cnmp_10 396 513 IPR000595 -
Cma04g00529 641 ProSiteProfiles cAMP/cGMP binding motif profile. 396 515 IPR000595 -
Cma04g00529 641 SUPERFAMILY cAMP-binding domain-like 323 514 IPR018490 -
Cma04g00529 641 Gene3D Helix hairpin bin 323 386 - -
Cma04g00529 641 Gene3D Jelly Rolls 390 525 IPR014710 -
Cma04g00529 641 Gene3D - 78 319 - -
Cma04g00529 641 PANTHER POTASSIUM CHANNEL AKT1 552 627 IPR045319 GO:0005249|GO:0006813
Cma04g00529 641 PANTHER POTASSIUM CHANNEL AKT1 42 525 IPR045319 GO:0005249|GO:0006813
Cma04g00529 641 PRINTS EAG/ELK/ERG potassium channel family signature 292 303 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma04g00529 641 PRINTS EAG/ELK/ERG potassium channel family signature 113 123 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma04g00529 641 PRINTS EAG/ELK/ERG potassium channel family signature 310 319 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma04g00529 641 PRINTS EAG/ELK/ERG potassium channel family signature 124 133 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma04g00529 641 PRINTS EAG/ELK/ERG potassium channel family signature 266 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma04g00529 641 ProSiteProfiles KHA domain profile. 555 641 IPR021789 -
Cma04g00529 641 CDD CAP_ED 396 499 IPR000595 -
Cma04g00529 641 PANTHER POTASSIUM CHANNEL AKT2/3 552 627 - -
Cma04g00529 641 PANTHER POTASSIUM CHANNEL AKT2/3 42 525 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00529 Cma-Chr4:2693113 Cma13g00555 Cma-Chr13:5665470 1.39E-172 dispersed
Cma16g00383 Cma-Chr16:1848720 Cma04g00529 Cma-Chr4:2693113 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00529 K21867 - csv:101205212 1046.57