Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00538 ATGGCTTCTCGTTTCTGGTCCCAGGGTGGTGGTAGTGGTAGTGATTCTGAAGCGGAGAAGAGTGACTATGATGAAGAGATTGACGACCTACAAGCTGATCCTAGCTCCCAAGCGAATAGAAGCAGATATCTGCAAGGGAATGCCAGTGACAGTGACGATTCTGATAAAGATAGACGTACTGTCAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTACTGTGGATCAGATGAAAAATGCAATGAAGATCAATGACTGGGTAAGCTTGCAGGAGAGTTTTGATAAAATAAATAAGCAGCTTGAGAAGGTCATGCGTGTTATGGAGTCCGAGAAGGTCCCAACTCTTTATATTAAAGCACTTGTGATGTTGGAGGACTTCCTAAATCAAGCCATGGCTAATAAGGAAGCTAAGAAGAAAATGAGCACTAGCAATGCTAAGGCCTTGAATTCAATGAAACAGAAGCTAAAGAAGAACAATAAGCAATATGAAGAGTTAATTACTAAGTGTAGGGAGAATCCTGAGGTTGAGGAAGAAAAGGATGATGAGATGGAAACGGAGGATGATGATGATGATGATGATGATTCTGTAATTGAGGGGGACCCTACTAAAATTTTGTCAGGATCAGAAGATGAAGAGGACGACGAAGAAGACCAAGAGGAGCCCGATGGCCCTTGGGTGAAACAGTTGAGCAAACGGGATAAGCTCATTGATAAGCAGTTTATGAAGGATCCGAGAGAGATCACATGGGACACTGTGAACAAGAAATTTAAGGAGGTTGTGGCTGCCCGGGGTAGGAAGGGAACTGGAAGATTTGAGCAGGTTGAGCAGCTTACGTTCTTAACAAGAGTTGCCAAGACCCCTGCACAGAAGCTTGAGATTTTGTTCAGTGTTATATCTGCTCAATTTGATGTTAATCCAGGTCTCAGTGGGCACATGCCTATCAATGTGTGGAAGAAGTGTGTGCAAAATATGCTTTCTATTATTGACATTCTTATGCAGAATTCTAACATTGTGGTGGATGATATGGTTGAACCTGATGAGAACGAGAGCCAGAAGCCAGCAGACTATGAGGGCACAATTCGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAGGATTGACACTGAGTTTTTTAAGAGCTTGCAGTGTATTGATCCACATACACGTGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGAATATTTGGAACGAACTGGGGATTACAAAGCAGCTTCAAAAGTTGCCTTGAGACGTGTCGAACTGATCTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTCGCAGAGCTGTCCGAAGATGGAGCTAGTGGAGATGCTAGTGAGGAGGCTAAAGTTGCAGAAGAGATTAGGGGCCCTGCTGCATTTATTGTCACGCCGGAGGTTGTACCTCGTGTACCCACCTTTCCAGAGAGTAGTAGATCTTTTATGGACATTCTGGTGACCCTTATATACCAATATGGAGACGAGCGCACTAAAGCACGAGCTATGCTCTGTGATATTTACCACCATGCGCTCTTTGATGAATTTTATATTTCTAGTGACTTGTTACTGATGAGTCACTTACAGGATAGTATTCAACACTTGGACATTTCAACACAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTCTATGTGGATTTCGGGTTGGCCTGATTAGTGAAGCACATGCCTGCCTTTCAGAATTATATTCTGGTGGGAGGGTGAGGGAATTGCTTGCACAAGGTGTCTCACAAAGCCGATATTATGAAAAGACTCCAGAGCAGGAAAGGCTTGAAAGGAGGAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAGTTCCCAACCTGGCAGGCAGTGTTCATGATGCAAAGCGCAAGGTTATTAGCAAGAACTTTAGAAGGTTACTGGAGGTGAGTGAGAGACAAACGTTCACTGGTCCTCCCGAGAATGTCAGAGATCATGTAATGGCTGCTACCAGAGCACTTCGCAAGGGCGATTTCCAGAAAGCTTTTGATGTCATTGCATCTTTAGCTGTATGGAAGCTACTTAGAAATTGTGATGATGTGCTGGAAATGGTTAAAGTAAAGATCAAGGTGGAAGCTCTGAGGACGTACCTTCAAACGTACTCTTCCTCATATGATTCTCTGAGTTTGGACCAGCTGACTCGAATGTTCGACATCGCAGAGGGTCAAACACACAGTATTGTTAGCAAGATGATGATAAATGAGGAGCTCCATGCAAGTTGGGACCAGCCAAGTGGATGTGTCATCTTTCATGATGTTGCGCTCACCCGGTTACAGGGCTTGGCGTTCCAGTTGGCAAATAAGCTGTCTATCCTTGCTGAAACTAATGAGAGGGCAGTGGAGGCAAGAATAGGAGGAGTAGATTTACCGATGAGGCGAAGAGACAACCAAGAGTATGCTGCCGGAGCTGTAGGTGGTGGTAGCAGGTGGCCAGACAATCAAGGAAGGCAAGGTGGCGGTAGTTCGCGTGCAGGGTATAGCAATGGAGGGCGTGGCGAAGGTGGGGGTGGCGGATATGGTAGAGACCGGACGGGTCAGTCACGAGGAGGCAATGCAGGAGGATATCAAAGCACCCGTTATCAAGACGCTGCATATAGATTGGGGAGGAGTGCTTATCAGTCTGGTTCTGTCCGAGGATCCCAGATGGGTGCTTCAGCTCGCATGGTCAGTCTCAACAAAGGGGTTATTGCTTAA 2808 45.33 MASRFWSQGGGSGSDSEAEKSDYDEEIDDLQADPSSQANRSRYLQGNASDSDDSDKDRRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVMESEKVPTLYIKALVMLEDFLNQAMANKEAKKKMSTSNAKALNSMKQKLKKNNKQYEELITKCRENPEVEEEKDDEMETEDDDDDDDDSVIEGDPTKILSGSEDEEDDEEDQEEPDGPWVKQLSKRDKLIDKQFMKDPREITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTRVAKTPAQKLEILFSVISAQFDVNPGLSGHMPINVWKKCVQNMLSIIDILMQNSNIVVDDMVEPDENESQKPADYEGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQEYLERTGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSEDGASGDASEEAKVAEEIRGPAAFIVTPEVVPRVPTFPESSRSFMDILVTLIYQYGDERTKARAMLCDIYHHALFDEFYISSDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLISEAHACLSELYSGGRVRELLAQGVSQSRYYEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNLAGSVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIASLAVWKLLRNCDDVLEMVKVKIKVEALRTYLQTYSSSYDSLSLDQLTRMFDIAEGQTHSIVSKMMINEELHASWDQPSGCVIFHDVALTRLQGLAFQLANKLSILAETNERAVEARIGGVDLPMRRRDNQEYAAGAVGGGSRWPDNQGRQGGGSSRAGYSNGGRGEGGGGGYGRDRTGQSRGGNAGGYQSTRYQDAAYRLGRSAYQSGSVRGSQMGASARMVSLNKGVIA 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2736291 2740799 + CmaCh04G005380.1 Cma04g00538 291619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00538 935 MobiDBLite consensus disorder prediction 32 48 - -
Cma04g00538 935 MobiDBLite consensus disorder prediction 1 15 - -
Cma04g00538 935 MobiDBLite consensus disorder prediction 49 68 - -
Cma04g00538 935 MobiDBLite consensus disorder prediction 139 157 - -
Cma04g00538 935 MobiDBLite consensus disorder prediction 139 231 - -
Cma04g00538 935 ProSiteProfiles PCI domain profile. 621 793 IPR000717 -
Cma04g00538 935 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 722 810 - -
Cma04g00538 935 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 933 - -
Cma04g00538 935 SUPERFAMILY Winged helix DNA-binding domain 730 791 IPR036390 -
Cma04g00538 935 Pfam PCI domain 661 789 IPR000717 -
Cma04g00538 935 Coils Coil 147 174 - -
Cma04g00538 935 MobiDBLite consensus disorder prediction 1 68 - -
Cma04g00538 935 MobiDBLite consensus disorder prediction 178 199 - -
Cma04g00538 935 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 863 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma04g00538 935 MobiDBLite consensus disorder prediction 839 895 - -
Cma04g00538 935 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 48 653 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma04g00538 935 MobiDBLite consensus disorder prediction 158 177 - -
Cma04g00538 935 MobiDBLite consensus disorder prediction 209 223 - -
Cma04g00538 935 SMART PINT_4 722 810 IPR000717 -
Cma04g00538 935 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 933 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00387 Cma-Chr16:1891498 Cma04g00538 Cma-Chr4:2736291 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00538 K03252 - csv:101203990 1501.49