Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00540 ATGGGCAAAGGGCCATTTTCTTTTCGCCGGAGTAATAGTCGTCGCCGCCCTAAGAAGGCAGCTCAGTCGACACCGTTGTTGTCGCCTCAGACACCTCTGCCGATTGACGTCAGTTCTCCTCCCATTAACAATAATGGTAGCAGCTTGGTCGGTGGTGGCGGTGGTGGTGGTGGTGGTGGGGCTGTGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCGAAGCTGTGGATGCGTCTCGACAGATGGGGGCAGTCGGAGCTTTTAGAGTGGGACAAGAGCGCAATAATCCGGCGTGCTGCAATTCCGGCTCGGGATTTGAGGATTCTTGGTCCTGTTTTCTCCCACTCCTCCAACATACTCGCAAGGGAAAAGGCCATGGTTGTTAACTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTACTATTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTGGATCAGCTAAGGAAACTACTTGCTACGAAGAGTTCATCTCAGGGCCATGGAGATGGAGCTGTGGATGAACGTGAAAATGATGTGAATGTTTCAAGTGGAGGAAAGTGGTTGCCAGTCTCCGAAGCTGCTGAAGCTGCTGAAGGTGTGCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGCGTTGGAGGTTGTATGTATGTATTTAGATTCCAGTGTGGAAGACCTTGAGAAAGATGCTTATCCAGTCCTTGATGAACTGGCTAGGAATGTCAGCACCAAGAATTTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAAAAGGTGCGTGACGAGATAGAGCATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATCTGATGCTTTGCTGGGAGGTCTGGCTTCCAACAGCACCACTGCCATCGTTCCCCATCTTCGTCGACTTAGTTCCACCCGGAGCGGAAGTATGGTGACCAGCAATCTTCTTGATGATAATGATGTAGAGGATCTGGAAATGTTACTCGAGGCATATTTTATGCAGTTAGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGATGACACCGAGGACTATGTCAATATTCAACTTGATAACCAACGAAATGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCCATTGAAACCTTAATTGCCGGGTTGTTTGGCATGAACATCCATTGTACATTGTACGATCGGGAGGGGATATTCGAGTACTTCGTCGGAGGTACTTCAGTAGGTTGTTTGTTGATTTTTGTACTTATTTTCGGGTATGCTAAATGGAAGAAGCTTCTCGGTTCATGA 1377 46.26 MGKGPFSFRRSNSRRRPKKAAQSTPLLSPQTPLPIDVSSPPINNNGSSLVGGGGGGGGGGAVGKVKKKAGGAKLWMRLDRWGQSELLEWDKSAIIRRAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLFDPLRQEVIPFVDQLRKLLATKSSSQGHGDGAVDERENDVNVSSGGKWLPVSEAAEAAEGVQYELPFEFQVLENALEVVCMYLDSSVEDLEKDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQSDALLGGLASNSTTAIVPHLRRLSSTRSGSMVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAIETLIAGLFGMNIHCTLYDREGIFEYFVGGTSVGCLLIFVLIFGYAKWKKLLGS 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2745971 2751815 + CmaCh04G005400.1 Cma04g00540 291621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00540 458 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 394 445 IPR045863 -
Cma04g00540 458 Gene3D Magnesium transport protein CorA, transmembrane region 396 456 - -
Cma04g00540 458 Gene3D - 63 146 - -
Cma04g00540 458 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 458 IPR039204 -
Cma04g00540 458 Coils Coil 256 290 - -
Cma04g00540 458 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 458 - -
Cma04g00540 458 MobiDBLite consensus disorder prediction 1 64 - -
Cma04g00540 458 CDD Mrs2_Mfm1p-like 75 455 IPR039204 -
Cma04g00540 458 Pfam CorA-like Mg2+ transporter protein 259 449 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma04g00540 458 Gene3D Magnesium transport protein CorA, transmembrane region 179 389 - -
Cma04g00540 458 MobiDBLite consensus disorder prediction 23 50 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00540 Cma-Chr4:2745971 Cma17g00187 Cma-Chr17:979088 3.31E-108 dispersed
Cma12g00807 Cma-Chr12:5843592 Cma04g00540 Cma-Chr4:2745971 5.26E-22 dispersed
Cma16g00389 Cma-Chr16:1901032 Cma04g00540 Cma-Chr4:2745971 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00540 K16075 - csv:101203496 699.893