Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00540 ATGGGCAAAGGGCCATTTTCTTTTCGCCGGAGTAATAGTCGTCGCCGCCCTAAGAAGGCAGCTCAGTCGACACCGTTGTTGTCGCCTCAGACACCTCTGCCGATTGACGTCAGTTCTCCTCCCATTAACAATAATGGTAGCAGCTTGGTCGGTGGTGGCGGTGGTGGTGGTGGTGGTGGGGCTGTGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCGAAGCTGTGGATGCGTCTCGACAGATGGGGGCAGTCGGAGCTTTTAGAGTGGGACAAGAGCGCAATAATCCGGCGTGCTGCAATTCCGGCTCGGGATTTGAGGATTCTTGGTCCTGTTTTCTCCCACTCCTCCAACATACTCGCAAGGGAAAAGGCCATGGTTGTTAACTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTACTATTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTGGATCAGCTAAGGAAACTACTTGCTACGAAGAGTTCATCTCAGGGCCATGGAGATGGAGCTGTGGATGAACGTGAAAATGATGTGAATGTTTCAAGTGGAGGAAAGTGGTTGCCAGTCTCCGAAGCTGCTGAAGCTGCTGAAGGTGTGCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGCGTTGGAGGTTGTATGTATGTATTTAGATTCCAGTGTGGAAGACCTTGAGAAAGATGCTTATCCAGTCCTTGATGAACTGGCTAGGAATGTCAGCACCAAGAATTTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAAAAGGTGCGTGACGAGATAGAGCATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATCTGATGCTTTGCTGGGAGGTCTGGCTTCCAACAGCACCACTGCCATCGTTCCCCATCTTCGTCGACTTAGTTCCACCCGGAGCGGAAGTATGGTGACCAGCAATCTTCTTGATGATAATGATGTAGAGGATCTGGAAATGTTACTCGAGGCATATTTTATGCAGTTAGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGATGACACCGAGGACTATGTCAATATTCAACTTGATAACCAACGAAATGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCCATTGAAACCTTAATTGCCGGGTTGTTTGGCATGAACATCCATTGTACATTGTACGATCGGGAGGGGATATTCGAGTACTTCGTCGGAGGTACTTCAGTAGGTTGTTTGTTGATTTTTGTACTTATTTTCGGGTATGCTAAATGGAAGAAGCTTCTCGGTTCATGA 1377 46.26 MGKGPFSFRRSNSRRRPKKAAQSTPLLSPQTPLPIDVSSPPINNNGSSLVGGGGGGGGGGAVGKVKKKAGGAKLWMRLDRWGQSELLEWDKSAIIRRAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLFDPLRQEVIPFVDQLRKLLATKSSSQGHGDGAVDERENDVNVSSGGKWLPVSEAAEAAEGVQYELPFEFQVLENALEVVCMYLDSSVEDLEKDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQSDALLGGLASNSTTAIVPHLRRLSSTRSGSMVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAIETLIAGLFGMNIHCTLYDREGIFEYFVGGTSVGCLLIFVLIFGYAKWKKLLGS 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2745971 2751815 + CmaCh04G005400.1 Cma04g00540 291621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00540 458 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 394 445 IPR045863 -
Cma04g00540 458 Gene3D Magnesium transport protein CorA, transmembrane region 396 456 - -
Cma04g00540 458 Gene3D - 63 146 - -
Cma04g00540 458 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 458 IPR039204 -
Cma04g00540 458 Coils Coil 256 290 - -
Cma04g00540 458 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 458 - -
Cma04g00540 458 MobiDBLite consensus disorder prediction 1 64 - -
Cma04g00540 458 CDD Mrs2_Mfm1p-like 75 455 IPR039204 -
Cma04g00540 458 Pfam CorA-like Mg2+ transporter protein 259 449 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma04g00540 458 Gene3D Magnesium transport protein CorA, transmembrane region 179 389 - -
Cma04g00540 458 MobiDBLite consensus disorder prediction 23 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00540 K16075 MRS2, MFM1; magnesium transporter - csv:101203496 699.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00540 Cma-Chr4:2745971 Cma17g00187 Cma-Chr17:979088 3.31E-108 dispersed
Cma12g00807 Cma-Chr12:5843592 Cma04g00540 Cma-Chr4:2745971 5.26E-22 dispersed
Cma16g00389 Cma-Chr16:1901032 Cma04g00540 Cma-Chr4:2745971 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma14g01051 . 1 447 MRS2 Gene Family AT1G16010 84.3 1.8e-205 712.6
Cma01g00188 . 1 426 MRS2 Gene Family AT1G16010 83.8 1.1e-191 666.8
Cma19g00058 . 35 370 MRS2 Gene Family AT1G16010 50.5 2.2e-83 307.0
Cma17g00187 CST 1 366 MRS2 Gene Family AT5G64560 79.3 4.4e-157 551.6
Cma08g01112 CST 1 358 MRS2 Gene Family AT5G64560 79.6 3.7e-156 548.5
Cma19g00058 . 1 379 MRS2 Gene Family AT5G64560 68.7 4.2e-131 465.3
Cma11g01693 CST 39 498 MRS2 Gene Family AT3G19640 64.4 6.7e-150 528.1
Cma19g00542 CST 1 217 MRS2 Gene Family AT3G19640 57.1 7.1e-59 225.7
Cma04g00540 . 1 458 MRS2 Gene Family AT3G58970 62.5 2.2e-144 509.6
Cma16g00389 . 59 439 MRS2 Gene Family AT3G58970 68.1 2.7e-134 476.1
Cma14g01051 . 13 447 MRS2 Gene Family AT2G03620 53.7 2.6e-113 406.4
Cma01g00188 . 13 426 MRS2 Gene Family AT2G03620 54.3 5.5e-108 388.7
Cma12g00103 . 138 402 MRS2 Gene Family AT2G03620 60.4 2.4e-87 320.1
Cma04g00540 . 63 457 MRS2 Gene Family AT4G28580 50.3 2.9e-90 329.7
Cma16g00389 . 59 439 MRS2 Gene Family AT4G28580 50.7 1.5e-89 327.4
Cma08g01112 CST 1 320 MRS2 Gene Family AT5G09690 77.8 2.8e-128 455.7
Cma17g00187 CST 1 328 MRS2 Gene Family AT5G09690 74.9 1.2e-126 450.3
Cma19g00058 . 1 332 MRS2 Gene Family AT5G09690 66.1 8.5e-109 391.0
Cma01g00188 . 40 384 MRS2 Gene Family AT5G09690 50.1 3.5e-78 289.3
Cma14g01051 . 40 383 MRS2 Gene Family AT5G09690 50.6 4.5e-78 288.9
Cma08g01112 CST 23 280 MRS2 Gene Family AT5G09720 70.5 3.6e-90 328.9
Cma17g00187 CST 23 288 MRS2 Gene Family AT5G09720 66.8 2.9e-87 319.3
Cma19g00058 . 34 292 MRS2 Gene Family AT5G09720 62.0 1.5e-75 280.4
Cma14g01051 . 1 447 MRS2 Gene Family AT1G80900 82.8 3.8e-200 694.9
Cma01g00188 . 1 426 MRS2 Gene Family AT1G80900 83.3 2.0e-188 656.0
Cma12g00807 . 114 453 MRS2 Gene Family AT5G22830 82.1 8.0e-153 537.7
Cma13g00268 . 114 442 MRS2 Gene Family AT5G22830 82.7 1.1e-149 527.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00540 Cma_Chr04 FPKM 11.186275 11.837487 16.871662 18.425789 8.927697 9.872678 8.755825 28.81501 27.176533 31.153938