Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00541 ATGGCAACCTCCCAAACTCCGAGTTGGCGGGAGGGTATGTCCTCTGATAACATTAAGGGCTTGGTTCTTGCTCTTTCCTCTAGTTTCTTTATTGGTGCTAGCTTCATTGTTAAGAAAAAGGGCTTGAAGAAAGCCGGCGCTTCAGGAGTCAGAGCAGGAGTTGGAGGCTATTCTTACTTATACGAGCCGCTATGGTGGGTGGGCATGATTACAATACTTGCACATATTATTTTGCGGGAGAGGTTGCATATTTTTGGAATTCTTGGATGCGTTCTTTGTGTAGTGGGTTCCACAACCATTGTGCTCCATGCTCCTCAAGAACGTGAAATTGAATCTGTAACTGAAGTGTGGCAAATGGCCATGGAGCCAGCCTTTCTGTTGTATGCAGCATCGGTCATGACAACTGTGTTTATACTCATATTCCACTTTATACCACAATATGGCCAGACTCACATTATGGTTTACATTGGTGTATGTTCCCTTGTAGGATCTTTGTCGGTCATGAGTGTCAAAGCAATAGGAATTGCCTTGAAGCTAACATTGTCAGGAATGAACCAGTTAATATATCCTCAAACGTGGATATTTACTTTAGTTGTGATTACTTGTGTGCTCACCCAGATGAATTATTTAAACAAGGCACTGGACACTTTTAATACAGCTGTTGTGTCCCCAATATACTACGTTATGTTCACATCATTTACCATCTTGGCCAGTGTGATCATGTTTAAGGACTGGGACAGGCAAAGCCCAACACAGGTTGTAACGGAGATGTGTGGATTTGTGACCATTCTTTCAGGAACTTTTCTTCTTCATAAAACAAAGGACATGGCTGATGGTTCAGTGGGAAACTCATTGCGGCTCTCTAAGCATGCTGATGAGGATGGTTTTAGTGGTGCGGAAGGCATTCCTCTTAGACGGCAAGATTCCTTGAGCACTCATGAGGAAGGTGAAGATGAATATGATTCCTTGGACCCTTATGCCAACGTTACTATCTCATGGGATTTCTTGGTGGAGAATGGGGATACTTTTGATGTGAGAGTTTCATTATACAATTTCCAACTGTTTCGCCATGTGGAACTGCCTGGTTGGAAACTTGGCTGGTCATGGAAAGGTGATGAGGTTATATGGAGTATGTGGGGGGCAGAGGCTACTCAGCAAGGAAATTGCTCCAAATACATAGGCAAGGAGCTTCCTCATTGTTGTGAGAAGAAGCCTGTGATTGTTGATCTTATGCCTGGAGCTCCTTATAAGTTGCAGGTGGCCAATTGTTGTAAAGGAGGTGTGCTATCTTCCATGAGACAAGACCCTGCAAACTATGGAGCTGCCTTCCAAATGAATATCGGGAAGTCTGCTGGGAAAGTTGTAGATAGCAAAATGCCTGCAAATTTCACTCTGGGGCTTCCTGGATATACTTGTAGTGACCCATTTCAAGTCTCTCCAACCAAGTTCAGTAAGGATGGCGGTCGTCGGTGGACACAAGTTCTAGAAACATGGAATGTGACATGTGTTTACTCGCAATTCCGATCATCACCAGCTCCAGGGTGCTGTGTTTCATTGTCGTCCTTCTACAACAGCACCATTGTTCCTTGCCCTCAGTGCAGCTGTGGCTGCCAAGGGATAGAGGGAACGAAATGCGTCGAGTCAGGTGAAACTCCATCTGTGTTGCAGCTTCCACATGAACACTACACTGCTGAAGTAGAACCATTGGTGAGGTGTTCACAGCATATGTGCCCAATAAGGGTGCATTGGCATGTGAAACAGAGCTATACACAGTATTGGAGGGTAAAGATAACTATCACAAATCTAAACTTTGCCAAGAACTACTCTCAATGGAGCTTAGTAGTGTTGCATCCCAACTTGAGGAATATTACTCAAGTTTTCAGCTTCAACTACAGCCCTCTCAATCAATATGGTCACATAAATGACACAGGGATGTTCTGGGGGATACAGTTCTACAATGATTTGATACTCACATCAGGAGAAAGAGGGAATGTTCAAACAGAGATGCTTCTCCAAAAAGATTCAGAAATTTTCACTTTCAGAGAAGGATGGGCGTTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATGAAGCTCGCAGGGCCATGGCCATGGCCGCCACGTTCAAGAGGAATTCAGTAGATGACAGTGCAATGGAAGTTACAAGCAGCGAGTATAGCACAGAAATAAAAGGGATAGGGGAATATCATACTGCTCATAACATGGCAGAAAGCAAACCATCTGCCTCCTGCGGAGGGATCAATGGTCCCGAGATCCTCTACATCATTATCATCAAGAAGATTGCTGGTCACCATACTTCCGCTCCGGGTGGAACTAAGTCGACGAAGATGGGGAACGATGGCAGTGGTGCTGAGTGGGAGAAAACAGGACCAAGAATCCTCAAATCCCGAGCCGGAATTGCAGCACGCCGGATTATTGCGCTCTTGTCCCACTCTAAAAGCTCCGACTGCCCCCATCTGTCGAGACGCATCCACAGCTTCGCTCCTCCAGCCTTCTTCTTCACCTTTCCCACAGCCCCACCACCACCACCACCACCGCCACCACCGACCAAGCTGCTACCATTATTGTTAATGGGAGGAGAACTGACGTCAATCGGCAGAGGTGTCTGA 2670 45.66 MATSQTPSWREGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGVRAGVGGYSYLYEPLWWVGMITILAHIILRERLHIFGILGCVLCVVGSTTIVLHAPQEREIESVTEVWQMAMEPAFLLYAASVMTTVFILIFHFIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWIFTLVVITCVLTQMNYLNKALDTFNTAVVSPIYYVMFTSFTILASVIMFKDWDRQSPTQVVTEMCGFVTILSGTFLLHKTKDMADGSVGNSLRLSKHADEDGFSGAEGIPLRRQDSLSTHEEGEDEYDSLDPYANVTISWDFLVENGDTFDVRVSLYNFQLFRHVELPGWKLGWSWKGDEVIWSMWGAEATQQGNCSKYIGKELPHCCEKKPVIVDLMPGAPYKLQVANCCKGGVLSSMRQDPANYGAAFQMNIGKSAGKVVDSKMPANFTLGLPGYTCSDPFQVSPTKFSKDGGRRWTQVLETWNVTCVYSQFRSSPAPGCCVSLSSFYNSTIVPCPQCSCGCQGIEGTKCVESGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEARRAMAMAATFKRNSVDDSAMEVTSSEYSTEIKGIGEYHTAHNMAESKPSASCGGINGPEILYIIIIKKIAGHHTSAPGGTKSTKMGNDGSGAEWEKTGPRILKSRAGIAARRIIALLSHSKSSDCPHLSRRIHSFAPPAFFFTFPTAPPPPPPPPPPTKLLPLLLMGGELTSIGRGV 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2746738 2771858 - CmaCh04G005410.1 Cma04g00541 291622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00541 889 PANTHER PROTEIN COBRA 318 716 IPR006918 GO:0010215|GO:0031225
Cma04g00541 889 Pfam Magnesium transporter NIPA 72 276 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cma04g00541 889 MobiDBLite consensus disorder prediction 787 807 - -
Cma04g00541 889 PANTHER COBRA-LIKE PROTEIN 6 318 716 - -
Cma04g00541 889 Pfam COBRA-like protein 345 505 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00541 Cma-Chr4:2746738 Cma18g00675 Cma-Chr18:6243887 2.08E-160 dispersed
Cma13g01062 Cma-Chr13:8051454 Cma04g00541 Cma-Chr4:2746738 3.35E-137 dispersed
Cma19g00723 Cma-Chr19:7310841 Cma04g00541 Cma-Chr4:2746738 4.87E-64 dispersed
Cma16g00391 Cma-Chr16:1914175 Cma04g00541 Cma-Chr4:2746738 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00541 - - cmo:103496092 798.505