Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00541 ATGGCAACCTCCCAAACTCCGAGTTGGCGGGAGGGTATGTCCTCTGATAACATTAAGGGCTTGGTTCTTGCTCTTTCCTCTAGTTTCTTTATTGGTGCTAGCTTCATTGTTAAGAAAAAGGGCTTGAAGAAAGCCGGCGCTTCAGGAGTCAGAGCAGGAGTTGGAGGCTATTCTTACTTATACGAGCCGCTATGGTGGGTGGGCATGATTACAATACTTGCACATATTATTTTGCGGGAGAGGTTGCATATTTTTGGAATTCTTGGATGCGTTCTTTGTGTAGTGGGTTCCACAACCATTGTGCTCCATGCTCCTCAAGAACGTGAAATTGAATCTGTAACTGAAGTGTGGCAAATGGCCATGGAGCCAGCCTTTCTGTTGTATGCAGCATCGGTCATGACAACTGTGTTTATACTCATATTCCACTTTATACCACAATATGGCCAGACTCACATTATGGTTTACATTGGTGTATGTTCCCTTGTAGGATCTTTGTCGGTCATGAGTGTCAAAGCAATAGGAATTGCCTTGAAGCTAACATTGTCAGGAATGAACCAGTTAATATATCCTCAAACGTGGATATTTACTTTAGTTGTGATTACTTGTGTGCTCACCCAGATGAATTATTTAAACAAGGCACTGGACACTTTTAATACAGCTGTTGTGTCCCCAATATACTACGTTATGTTCACATCATTTACCATCTTGGCCAGTGTGATCATGTTTAAGGACTGGGACAGGCAAAGCCCAACACAGGTTGTAACGGAGATGTGTGGATTTGTGACCATTCTTTCAGGAACTTTTCTTCTTCATAAAACAAAGGACATGGCTGATGGTTCAGTGGGAAACTCATTGCGGCTCTCTAAGCATGCTGATGAGGATGGTTTTAGTGGTGCGGAAGGCATTCCTCTTAGACGGCAAGATTCCTTGAGCACTCATGAGGAAGGTGAAGATGAATATGATTCCTTGGACCCTTATGCCAACGTTACTATCTCATGGGATTTCTTGGTGGAGAATGGGGATACTTTTGATGTGAGAGTTTCATTATACAATTTCCAACTGTTTCGCCATGTGGAACTGCCTGGTTGGAAACTTGGCTGGTCATGGAAAGGTGATGAGGTTATATGGAGTATGTGGGGGGCAGAGGCTACTCAGCAAGGAAATTGCTCCAAATACATAGGCAAGGAGCTTCCTCATTGTTGTGAGAAGAAGCCTGTGATTGTTGATCTTATGCCTGGAGCTCCTTATAAGTTGCAGGTGGCCAATTGTTGTAAAGGAGGTGTGCTATCTTCCATGAGACAAGACCCTGCAAACTATGGAGCTGCCTTCCAAATGAATATCGGGAAGTCTGCTGGGAAAGTTGTAGATAGCAAAATGCCTGCAAATTTCACTCTGGGGCTTCCTGGATATACTTGTAGTGACCCATTTCAAGTCTCTCCAACCAAGTTCAGTAAGGATGGCGGTCGTCGGTGGACACAAGTTCTAGAAACATGGAATGTGACATGTGTTTACTCGCAATTCCGATCATCACCAGCTCCAGGGTGCTGTGTTTCATTGTCGTCCTTCTACAACAGCACCATTGTTCCTTGCCCTCAGTGCAGCTGTGGCTGCCAAGGGATAGAGGGAACGAAATGCGTCGAGTCAGGTGAAACTCCATCTGTGTTGCAGCTTCCACATGAACACTACACTGCTGAAGTAGAACCATTGGTGAGGTGTTCACAGCATATGTGCCCAATAAGGGTGCATTGGCATGTGAAACAGAGCTATACACAGTATTGGAGGGTAAAGATAACTATCACAAATCTAAACTTTGCCAAGAACTACTCTCAATGGAGCTTAGTAGTGTTGCATCCCAACTTGAGGAATATTACTCAAGTTTTCAGCTTCAACTACAGCCCTCTCAATCAATATGGTCACATAAATGACACAGGGATGTTCTGGGGGATACAGTTCTACAATGATTTGATACTCACATCAGGAGAAAGAGGGAATGTTCAAACAGAGATGCTTCTCCAAAAAGATTCAGAAATTTTCACTTTCAGAGAAGGATGGGCGTTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATGAAGCTCGCAGGGCCATGGCCATGGCCGCCACGTTCAAGAGGAATTCAGTAGATGACAGTGCAATGGAAGTTACAAGCAGCGAGTATAGCACAGAAATAAAAGGGATAGGGGAATATCATACTGCTCATAACATGGCAGAAAGCAAACCATCTGCCTCCTGCGGAGGGATCAATGGTCCCGAGATCCTCTACATCATTATCATCAAGAAGATTGCTGGTCACCATACTTCCGCTCCGGGTGGAACTAAGTCGACGAAGATGGGGAACGATGGCAGTGGTGCTGAGTGGGAGAAAACAGGACCAAGAATCCTCAAATCCCGAGCCGGAATTGCAGCACGCCGGATTATTGCGCTCTTGTCCCACTCTAAAAGCTCCGACTGCCCCCATCTGTCGAGACGCATCCACAGCTTCGCTCCTCCAGCCTTCTTCTTCACCTTTCCCACAGCCCCACCACCACCACCACCACCGCCACCACCGACCAAGCTGCTACCATTATTGTTAATGGGAGGAGAACTGACGTCAATCGGCAGAGGTGTCTGA 2670 45.66 MATSQTPSWREGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKKAGASGVRAGVGGYSYLYEPLWWVGMITILAHIILRERLHIFGILGCVLCVVGSTTIVLHAPQEREIESVTEVWQMAMEPAFLLYAASVMTTVFILIFHFIPQYGQTHIMVYIGVCSLVGSLSVMSVKAIGIALKLTLSGMNQLIYPQTWIFTLVVITCVLTQMNYLNKALDTFNTAVVSPIYYVMFTSFTILASVIMFKDWDRQSPTQVVTEMCGFVTILSGTFLLHKTKDMADGSVGNSLRLSKHADEDGFSGAEGIPLRRQDSLSTHEEGEDEYDSLDPYANVTISWDFLVENGDTFDVRVSLYNFQLFRHVELPGWKLGWSWKGDEVIWSMWGAEATQQGNCSKYIGKELPHCCEKKPVIVDLMPGAPYKLQVANCCKGGVLSSMRQDPANYGAAFQMNIGKSAGKVVDSKMPANFTLGLPGYTCSDPFQVSPTKFSKDGGRRWTQVLETWNVTCVYSQFRSSPAPGCCVSLSSFYNSTIVPCPQCSCGCQGIEGTKCVESGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEARRAMAMAATFKRNSVDDSAMEVTSSEYSTEIKGIGEYHTAHNMAESKPSASCGGINGPEILYIIIIKKIAGHHTSAPGGTKSTKMGNDGSGAEWEKTGPRILKSRAGIAARRIIALLSHSKSSDCPHLSRRIHSFAPPAFFFTFPTAPPPPPPPPPPTKLLPLLLMGGELTSIGRGV 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2746738 2771858 - CmaCh04G005410.1 Cma04g00541 291622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00541 889 PANTHER PROTEIN COBRA 318 716 IPR006918 GO:0010215|GO:0031225
Cma04g00541 889 Pfam Magnesium transporter NIPA 72 276 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cma04g00541 889 MobiDBLite consensus disorder prediction 787 807 - -
Cma04g00541 889 PANTHER COBRA-LIKE PROTEIN 6 318 716 - -
Cma04g00541 889 Pfam COBRA-like protein 345 505 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00541 - - - cmo:103496092 798.505
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00541 Cma-Chr4:2746738 Cma18g00675 Cma-Chr18:6243887 2.08E-160 dispersed
Cma13g01062 Cma-Chr13:8051454 Cma04g00541 Cma-Chr4:2746738 3.35E-137 dispersed
Cma19g00723 Cma-Chr19:7310841 Cma04g00541 Cma-Chr4:2746738 4.87E-64 dispersed
Cma16g00391 Cma-Chr16:1914175 Cma04g00541 Cma-Chr4:2746738 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00218 CCT,CST,ECH 48 447 COBRA Gene Family AT5G60920 80.5 6.4e-210 727.2
Cma10g00289 CCT,CST,ECH 48 447 COBRA Gene Family AT5G60920 80.5 1.9e-209 725.7
Cma14g01158 CST 42 450 COBRA Gene Family AT5G60920 74.6 3.0e-199 691.8
Cma01g00420 . 44 448 COBRA Gene Family AT5G60920 74.3 3.7e-194 674.9
Cma01g00421 . 31 426 COBRA Gene Family AT5G60920 69.2 1.8e-180 629.4
Cma11g00220 CST 55 450 COBRA Gene Family AT5G60920 68.2 1.4e-177 619.8
Cma10g00288 CST 52 447 COBRA Gene Family AT5G60920 68.6 6.0e-176 614.4
Cma13g01062 CCT,ECH 35 427 COBRA Gene Family AT5G60920 58.0 5.1e-143 505.0
Cma04g00541 . 331 716 COBRA Gene Family AT5G60920 55.0 1.1e-129 460.7
Cma10g00289 CCT,CST,ECH 18 444 COBRA Gene Family AT3G02210 73.1 2.2e-203 705.7
Cma11g00218 CCT,CST,ECH 18 444 COBRA Gene Family AT3G02210 73.3 2.9e-203 705.3
Cma14g01158 CST 12 448 COBRA Gene Family AT3G02210 73.1 4.1e-202 701.4
Cma01g00420 . 19 440 COBRA Gene Family AT3G02210 73.5 3.6e-198 688.3
Cma11g00220 CST 29 454 COBRA Gene Family AT3G02210 66.8 2.6e-180 629.0
Cma01g00421 . 5 429 COBRA Gene Family AT3G02210 66.5 5.8e-180 627.9
Cma10g00288 CST 26 452 COBRA Gene Family AT3G02210 66.4 1.9e-178 622.9
Cma13g01062 CCT,ECH 18 426 COBRA Gene Family AT3G02210 58.1 1.1e-149 527.3
Cma04g00541 . 318 710 COBRA Gene Family AT3G02210 56.1 1.8e-136 483.4
Cma10g00289 CCT,CST,ECH 18 446 COBRA Gene Family AT3G29810 74.2 8.4e-200 693.7
Cma11g00218 CCT,CST,ECH 18 438 COBRA Gene Family AT3G29810 74.0 7.9e-198 687.2
Cma14g01158 CST 27 448 COBRA Gene Family AT3G29810 71.6 3.4e-193 671.8
Cma01g00420 . 28 448 COBRA Gene Family AT3G29810 72.0 1.1e-191 666.8
Cma01g00421 . 14 428 COBRA Gene Family AT3G29810 66.7 9.0e-178 620.5
Cma11g00220 CST 37 436 COBRA Gene Family AT3G29810 67.5 3.8e-176 615.1
Cma10g00288 CST 40 433 COBRA Gene Family AT3G29810 68.0 1.4e-173 606.7
Cma13g01062 CCT,ECH 23 406 COBRA Gene Family AT3G29810 57.7 1.7e-144 510.0
Cma04g00541 . 318 710 COBRA Gene Family AT3G29810 56.1 2.9e-136 482.6
Cma01g00421 . 9 339 COBRA Gene Family AT5G15630 83.1 7.0e-178 620.5
Cma11g00220 CST 39 363 COBRA Gene Family AT5G15630 84.0 3.5e-177 618.2
Cma10g00288 CST 36 360 COBRA Gene Family AT5G15630 83.7 1.1e-175 613.2
Cma10g00289 CCT,CST,ECH 31 361 COBRA Gene Family AT5G15630 73.8 1.9e-151 532.7
Cma11g00218 CCT,CST,ECH 31 361 COBRA Gene Family AT5G15630 74.1 2.5e-151 532.3
Cma14g01158 CST 27 358 COBRA Gene Family AT5G15630 66.9 3.3e-143 505.4
Cma01g00420 . 29 358 COBRA Gene Family AT5G15630 66.7 1.2e-140 496.9
Cma13g01062 CCT,ECH 13 334 COBRA Gene Family AT5G15630 60.4 3.6e-126 448.7
Cma04g00541 . 320 641 COBRA Gene Family AT5G15630 50.2 1.5e-95 347.1
Cma14g01158 CST 25 218 COBRA Gene Family AT5G60950 61.5 2.1e-65 246.1
Cma10g00289 CCT,CST,ECH 30 224 COBRA Gene Family AT5G60950 59.2 6.3e-65 244.6
Cma01g00420 . 13 220 COBRA Gene Family AT5G60950 58.4 3.1e-64 242.3
Cma11g00218 CCT,CST,ECH 30 224 COBRA Gene Family AT5G60950 57.1 1.0e-62 237.3
Cma11g00220 CST 28 231 COBRA Gene Family AT5G60950 55.6 8.7e-59 224.2
Cma01g00421 . 8 207 COBRA Gene Family AT5G60950 55.2 3.3e-58 222.2
Cma10g00288 CST 48 228 COBRA Gene Family AT5G60950 56.4 3.1e-56 215.7
Cma13g01062 CCT,ECH 31 209 COBRA Gene Family AT5G60950 52.5 5.3e-48 188.3
Cma04g00541 . 320 712 COBRA Gene Family AT1G09790 60.5 1.7e-147 520.0
Cma11g00220 CST 41 434 COBRA Gene Family AT1G09790 53.4 6.8e-133 471.5
Cma14g01158 CST 23 454 COBRA Gene Family AT1G09790 50.6 8.9e-133 471.1
Cma10g00289 CCT,CST,ECH 32 432 COBRA Gene Family AT1G09790 53.8 1.2e-132 470.7
Cma10g00288 CST 40 431 COBRA Gene Family AT1G09790 53.9 1.5e-132 470.3
Cma11g00218 CCT,CST,ECH 20 432 COBRA Gene Family AT1G09790 52.0 1.3e-131 467.2
Cma01g00421 . 3 410 COBRA Gene Family AT1G09790 51.3 7.1e-130 461.5
Cma01g00420 . 16 428 COBRA Gene Family AT1G09790 50.7 7.8e-129 458.0
Cma14g01601 CST 33 630 COBRA Gene Family AT4G16120 66.6 4.6e-250 861.3
Cma06g01550 CST 38 651 COBRA Gene Family AT4G16120 62.9 2.8e-239 825.5
Cma16g00850 CST 69 667 COBRA Gene Family AT4G16120 52.7 5.1e-201 698.4
Cma04g00942 CST 79 673 COBRA Gene Family AT4G16120 52.4 1.1e-195 680.6
Cma14g01601 CST 13 632 COBRA Gene Family AT3G16860 62.4 1.3e-236 816.6
Cma06g01550 CST 13 656 COBRA Gene Family AT3G16860 58.4 1.6e-226 783.1
Cma16g00850 CST 65 667 COBRA Gene Family AT3G16860 52.8 1.5e-197 686.8
Cma04g00942 CST 79 673 COBRA Gene Family AT3G16860 51.9 2.4e-190 662.9
Cma14g01601 CST 11 650 COBRA Gene Family AT5G49270 60.0 9.9e-237 817.0
Cma06g01550 CST 16 662 COBRA Gene Family AT5G49270 57.2 3.5e-226 781.9
Cma16g00850 CST 73 668 COBRA Gene Family AT5G49270 51.9 4.8e-199 691.8
Cma04g00942 CST 79 672 COBRA Gene Family AT5G49270 51.0 1.4e-190 663.7
Cma04g00942 CST 2 697 COBRA Gene Family AT3G20580 58.0 1.0e-241 833.6
Cma16g00850 CST 63 667 COBRA Gene Family AT3G20580 61.5 6.3e-239 824.3
Cma14g01601 CST 29 650 COBRA Gene Family AT3G20580 53.5 1.8e-201 699.9
Cma06g01550 CST 34 650 COBRA Gene Family AT3G20580 53.2 1.3e-199 693.7
Cma16g00850 CST 62 690 COBRA Gene Family AT4G27110 60.8 4.5e-237 818.1
Cma04g00942 CST 73 698 COBRA Gene Family AT4G27110 61.1 4.6e-234 808.1
Cma14g01601 CST 26 642 COBRA Gene Family AT4G27110 51.2 3.0e-193 672.5
Cma06g01550 CST 31 665 COBRA Gene Family AT4G27110 50.2 1.3e-191 667.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010841 0 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00541 Cma_Chr04 FPKM 7.524303 8.3125 8.073935 7.390788 9.99111 10.086896 9.329298 6.016264 5.094306 5.681409