Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00549 ATGGGTTGCGTTTGTTGTAAGCCCTCTGCTATAGAGGATAGCAAGGAAAGTCCGAGGGAGAGGCTGTCGAACAAGACCTCGTCCGACCTGCAGGTGGCAAGAGTGACTTCGTCGTCGAGGGAAGAAGCTTATCGATCTAAAGATCATCATGATGGTAATGATGCAATAGTGACATTGATTAACAAGCAGGTGAATGGGTCAGGTCGATTGCAGAGTGAAATTTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGGCTGCTCAACATCCTTCAATGGGGAGAATTCCAAAGGCAGCAGAGGGAGACCAAATTGCTGCAGGCTGGCCGCCGTGGCTGGCTGCAGTTGCTGGAGAGGCAATCAGAGGGTGGTTACCCCGACGCGCTGATTCTTTTGAGAAATTGGATAAAATTGGTCAAGGGACTTATAGTAATGTATATAGGGCTCGTGACCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTCGACAATCTGGAACCTGAGAGCGTCCGCTTTATGGCCAGGGAAATTCACATATTGCGTCGGCTCGATCATCCAAATGTGATAAAGCTGGAGGGTCTAGTTACGTCAAGGATGTCTTGCAGCCTCTATCTTGTATTTGAGTACATGGAACACGACTTGGCAGGACTTGCTTCACACCCTGGTGTAAAGTTTACAGAGGCACAGGTTAAATGTTACATGCAACAACTTTTGCATGGACTTGATCATTGTCACAGTCATGGAGTTCTGCATCGTGATATAAAGGGTTCCAACCTTTTAATCGACAATAATGGCGTCTTGAAAATTGCAGACTTTGGTTTAGCAAGTTTTTTTGATATCCACCAAAATCAGCCGCTGACAAGTCGGGTTGTAACTCTTTGGTATAGACCGCCTGAGCTTTTACTCGGTGCTACTTATTATGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACAGAGGTGGAGCAGCTACATAAAATATTTAAACTCTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGGCTGCCACATGCAACGATATTTAAGCCCCAACAGCCCTATAGATGCTGCGTTGCTGACACGTTTAAGGATTTCCCTGCACCAGCTTTAGCTCTCATTGAGATGTTACTCTCTATAGATCCTGCTGATCGTGGCTCTGCCGCTCTTGCCCTTAAAAGCGAATTTTTTTCAACGAAGCCACTTCCTTGTGATCCTTCGAGCTTGCCGAAGTATCCTCCGAGCAAAGAATTTGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCGGTAGGAAGCAAGGGACACCGACATGACCTGCAAAGGAAAGATAGAGAGTCTCGAGCCGTCCCTGCACCTGATGCCAATGCTGAGTTAGTCTCATCAATGCAGAAAAGACAATCCAATTCAAAGAGCCGGAGTGAAAAGTTTAATCCACACCCAGAAGAAGCTTCTGGCTTTCCAATTGATCCACCTAGACCATCACAAGGAGCAGAACGAACGGATTCTCAGGTGCGTCATCCTAAGAAAGCCTCACATTCAGGACCACTTGCTCAGCGGGCCGCTTGGGTAAAGGCTAGTAAGAACCCAGATGACGCTCCGAAAATCTCAACCGGGGCCGATACGTTCACAACTTCAGGACTAGTAGCACCTAGAAGAAGTATGCTGGGGGAAAAGTCTGACGCTTCACAAGGAGAGGTTAAAAAACTAATTGGCAGGTTTCCTGGTTCCTTCAAGGAAACCTCGGAATCCTCTATGCTACCCGACCAGAAGTTCTCAAATCACAGTATCGTAGGCTCACACGACAAAGAGAGGTGCAGCACCAAAGACCCTATAGTTGTGGGTTATGGCTCAAAAGGTCATAAGATTCATTACTCTGGTCCATTACTGGTTCCTTCCGGCAACATGGACCAAATGTTGAAGGACCACGATCGTCATATCCAAGAGGCAGTAAGACGAGCTCGGCTCGACAAGGCCAAGGCACGAAAGGTTCAAGTTGACGGGAAACAGATGTCGACAAATTCATTATTCGTCTCCGGTCGTTAA 2106 46.63 MGCVCCKPSAIEDSKESPRERLSNKTSSDLQVARVTSSSREEAYRSKDHHDGNDAIVTLINKQVNGSGRLQSEIFERKREKMEHMAAQHPSMGRIPKAAEGDQIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLHGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRCCVADTFKDFPAPALALIEMLLSIDPADRGSAALALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRHDLQRKDRESRAVPAPDANAELVSSMQKRQSNSKSRSEKFNPHPEEASGFPIDPPRPSQGAERTDSQVRHPKKASHSGPLAQRAAWVKASKNPDDAPKISTGADTFTTSGLVAPRRSMLGEKSDASQGEVKKLIGRFPGSFKETSESSMLPDQKFSNHSIVGSHDKERCSTKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKARKVQVDGKQMSTNSLFVSGR 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2787202 2792174 + CmaCh04G005490.1 Cma04g00549 291630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00549 701 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Cma04g00549 701 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00549 701 PANTHER CELL DIVISION PROTEIN KINASE 1 683 - -
Cma04g00549 701 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00549 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Cma04g00549 701 MobiDBLite consensus disorder prediction 445 560 - -
Cma04g00549 701 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Cma04g00549 701 CDD STKc_CDK9_like 131 415 - -
Cma04g00549 701 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Cma04g00549 701 PANTHER CYCLIN-DEPENDENT KINASE 1 683 - -
Cma04g00549 701 MobiDBLite consensus disorder prediction 445 471 - -
Cma04g00549 701 MobiDBLite consensus disorder prediction 7 50 - -
Cma04g00549 701 MobiDBLite consensus disorder prediction 24 39 - -
Cma04g00549 701 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00549 701 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00549 Cma16g00396 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00843 Cma-Chr1:4632630 Cma04g00549 Cma-Chr4:2787202 0 dispersed
Cma02g00097 Cma-Chr2:498270 Cma04g00549 Cma-Chr4:2787202 0 dispersed
Cma04g00549 Cma-Chr4:2787202 Cma20g00202 Cma-Chr20:955550 0 dispersed
Cma06g00890 Cma-Chr6:5659558 Cma04g00549 Cma-Chr4:2787202 1.01E-45 dispersed
Cma09g01247 Cma-Chr9:8355019 Cma04g00549 Cma-Chr4:2787202 2.42E-07 dispersed
Cma20g00021 Cma-Chr20:74064 Cma04g00549 Cma-Chr4:2787202 1.69E-117 dispersed
Cma16g00396 Cma-Chr16:1972196 Cma04g00549 Cma-Chr4:2787202 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68468 PF00069 Pkinase 1.00E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00549 - - csv:101222182 1321.61