Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00556 ATGTTGCACACCCTCAACCTTCTCTCCTCCTCCAATTTCCCCCTCTCTCTCTCTCTAACTCACAATCTCCTTCTCTCTCCTCCGCCCTTCTCCTCTCTCCACCGACCCATTACCTCCCCCTCTGTTCCTCCCCTCCGAACTCACCAATGCTTCTGCTTACCCCAATTCTCTGAACTCTCCGACGCCGCCACCTCTTTTCCCGATGACGATGGCCCAATTGAACTCCCATCCACCATTTTTGCTACCACTGATGACCCTTCTTCTATCCAAGTCGCTACCAGTGTTCTCCTTACTGGGGCTATCTCCGTCTTCCTCTTTCGCTCCCTTCGCCGCCGTGCCAAGCGGGTCAAAGAGCTGAAATTCAGGTCTGCTGGAGTTAAGAAGTCTCTAAAGGAGGAAGCAATGGAGAGCCTGAAAGCAATTAGTACAGGTCCAATTCAATCAAAGTCTAAACCTTCACCTGTACAAGCATTCTTGGGAGCTATAGCAGCCGGTGTTATTGCATTGATCTTATATAAGTTCACCACTACCATTGAAGCTGCTCTGAACCGACAGACTGTGTCCGATAACTTCTCGGTTCGACAACTGACGATAACGATAAGAACTATCGTGAACGGAATATGCTACCTCGCGACATTTGTTTTCGGAATCAATGCTGTTGGGTTATTCCTTTACTCTGGTCAGTTGGCATTAAACTCTGTCATGGAAGAAGGTTCAGAAGATAAAGAACTTGCAACTAAAGGTGATAAGCAAGTTAGCTCGCCGAACTCAACCGTTGAAACAACCCTCGATGGCACCGAATCAAGCAGCAGCAAAGATGATCAAAGTTGA 831 47.89 MLHTLNLLSSSNFPLSLSLTHNLLLSPPPFSSLHRPITSPSVPPLRTHQCFCLPQFSELSDAATSFPDDDGPIELPSTIFATTDDPSSIQVATSVLLTGAISVFLFRSLRRRAKRVKELKFRSAGVKKSLKEEAMESLKAISTGPIQSKSKPSPVQAFLGAIAAGVIALILYKFTTTIEAALNRQTVSDNFSVRQLTITIRTIVNGICYLATFVFGINAVGLFLYSGQLALNSVMEEGSEDKELATKGDKQVSSPNSTVETTLDGTESSSSKDDQS 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2816316 2819943 + CmaCh04G005560.1 Cma04g00556 291637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00556 276 MobiDBLite consensus disorder prediction 249 270 - -
Cma04g00556 276 MobiDBLite consensus disorder prediction 242 276 - -
Cma04g00556 276 Pfam Protein of unknown function (DUF3082) 152 229 IPR021434 -
Cma04g00556 276 PANTHER OS02G0307800 PROTEIN 34 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00556 - - - bhj:120091579 405.986
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g161 . . . . . . Bma10g00489 . . Cmo04g00590 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1046 Cone15ag1034 . . . . Blo07g00956 . Bda05g00776 . . Bpe03g00844 . . . . . Cma04g00556 . Car04g00526 . . Cpe01g00499 . . . . . . . Cla05g00995 Cam05g1086 Cec05g1094 Cco05g1088 Clacu05g1080 Cmu05g1030 Cre05g1104 . . Chy06g01169 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011557 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 0 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00556 Cma_Chr04 FPKM 3.302653 3.960294 20.305155 22.071655 63.622272 52.589874 59.395142 10.467917 10.380738 12.636712