Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00557 ATGGATTCTGACCGCCATTTTCGTAACACTACGAGTTCCACTGCCTCCGCCTCCGCCTCCAGCGAGCTCTTTATCTGCTTTACTTCTCGCATCTCTTCTTCTTCTTCTTCTTCTTCCTCCATGAAGATCTCTTCCAAGTCCATTCTCAGCCCTGGCCGACCTCGTGAACCTGCTCAGATTTCCCTCTCCACTTCCCTCAGCCGCCGCCTTAAATCCAGCGGAAGTCTCAAGGGTGGTCAGGCCTCGCCTATGTTTCCGACTGGCGGGAAGAAGAGAGGTTGTGGGTTTGAGAATCCTGAGCCGTCGTCGCCCAAGGTTACTTGCATTGGACAGGTTAGGGTTAAGACGAAGAAGCAGGGGAAGAAGATGAGGGCTAGATCGCTGAAGCGGAGGAGTAATTCGGAGGCTAGTTTTCGGAAATCGGAGAGTGTTCAAGTTCAATCACAGATGAATGGTAATGACTTCATGAATCAGTCGTCGCATCATAATCACCATCTTCTTCGTCAGAACAGTAATGGCGGAAACGGTTTCCAGCAGGAGTGTCTGTCGCATCGGAACCAGCGGTGGGTGCATTTGCCTTTCACGATTTGCGAGGCGCTTAGGGCTTTCGGTGCTGAACTCAACTGCTTCTTGCCGTGCCATTCGTCGTGTTCGAGCAATAGGGAGAATAATAAGGAATCGAAGACGACGGAGAGGTCGTCGGAAAGCGAGAGTTCTTGTGGGACGGTGTTTGCGCGGTGGTTGGTAGCGGTGCAGGATAACGACGGAAGAGGACGGGAGATCGAACTAGTGGTCGGAGACGAAGAATCTCGAACGGAGAAGGATAACGGAAGCCAGAGACGCCATGTTTTCGAGGGATTAGATTTCAAAGAGGAGAAAGAAGTTGTGCAGGAAGAGGAATCGAGGATCAGCATTTGCATTCCGCCGAAGAATGCTTTGTTGCTAATGAGGTGCAGATCTGATCCGGTGAAAATGGCGGAACTGGCGAAACGATTCTGTGAATCTCCTGTGCCAAAATTGGAAGAAGAAGAGGAAGAAGACGATGAAGAGAACAGTAATCAAAACGAAGCCAAAAAAGGTGCGCCACTGCCTGTACTTGTGCCTTTGAGTGTAACTTTAATCAAGGAAGAGGAAGAAGAAACAAAAGTAGAGCTAAATTCGAAGCTTAAAAACGAGGAAGAAATGATTGAAGAATCTGTATCTGATGCCGAAGAAGAAGAAGAAGCTAATTTGGTTTTACAGGAGGAGAAAGAGGAAGAAGTTAATGGCGAAGAATCCATAGAAATGGCCACAGAAAACGAAATCGATGTGCAGAAATTAGATATTACTGTTACTAATCATCAGGATCAAGAAGAAGAAGCAGAGGAAGACAAAGAACAAGAACACAGAATCGATCAAGATAATCAACAACAGAAGTTAGAAGAAACAATGGCATTTTCGATTCCGATTTCAACCCGATGCGAACCTGAAATGGTTCAAGATGCTGAGAAGCTGGAATCGGCTGAAGGAGACGAATTCAAGCCATCCCATGGAAACGAACAAGACTTCGAAACAGAAGAACACGAAGAACACGAAGAACACGAAGAACACAAAGAACAGATGAAAGAACTTGAGGAAGAAGAAAAAAGTGAAAATGGCGAAAATCCGACATCACCACCATTATCAGTGGAAACTGCAGTTGATGGGAATTGGGAAGAAGAAGAAGAAGAAGAAGAAGAAAACAGAGGTAGGTCAACCGAAGAACTAAAAGGGACGACGGCGACAGCGATGGATGAAGGAATCGGACCCCACATCCAAAACGACGACGAAATGGGTCTAGAGGAGGAGGACCAGTCAAAGGAGCGAGAAACTCCGCCGCCGGAGCCGGAGAGAGAAACGCAAACACAAACGAAACCAGAAGCCTCTGTCCTTCCAGATTGCTTGCTGTTAATGATGTACGAGCCAAAGCTATCAATGGAGGTATCAAAGGAGACATGGGTTTGCAGCACAGACTTCATAAGATGCGTTCCAACGAGGGAGAAGAAGGCGGCTCCGCCGCCGGCACCGAAGAAGCGAGAGATAAAGACGGCGGGGAAACACACGCAGACGCAGGTGGCGATACAGCCGGGAAGGTGGTCGTGTTCATTTCCGGCAGCGGCGGCGGCGGCGGCGATGATAGAACAGAAGCTAGAGAGGGCAAAGGGAGGGTACGAACCGTTCGTTCTGACGAGGTGCAAATCGGAGCCGATGAGGTCGTCAGCTAAGCTAGCGCCAGACACTGGCTTTTGCAAAGACCGCAATCTTGAGCCGCATCGCCCGGCTACGTTCGGCATCGGCGCGGCTGGAGTTGGATTTTGA 2337 48.95 MDSDRHFRNTTSSTASASASSELFICFTSRISSSSSSSSSMKISSKSILSPGRPREPAQISLSTSLSRRLKSSGSLKGGQASPMFPTGGKKRGCGFENPEPSSPKVTCIGQVRVKTKKQGKKMRARSLKRRSNSEASFRKSESVQVQSQMNGNDFMNQSSHHNHHLLRQNSNGGNGFQQECLSHRNQRWVHLPFTICEALRAFGAELNCFLPCHSSCSSNRENNKESKTTERSSESESSCGTVFARWLVAVQDNDGRGREIELVVGDEESRTEKDNGSQRRHVFEGLDFKEEKEVVQEEESRISICIPPKNALLLMRCRSDPVKMAELAKRFCESPVPKLEEEEEEDDEENSNQNEAKKGAPLPVLVPLSVTLIKEEEEETKVELNSKLKNEEEMIEESVSDAEEEEEANLVLQEEKEEEVNGEESIEMATENEIDVQKLDITVTNHQDQEEEAEEDKEQEHRIDQDNQQQKLEETMAFSIPISTRCEPEMVQDAEKLESAEGDEFKPSHGNEQDFETEEHEEHEEHEEHKEQMKELEEEEKSENGENPTSPPLSVETAVDGNWEEEEEEEEENRGRSTEELKGTTATAMDEGIGPHIQNDDEMGLEEEDQSKERETPPPEPERETQTQTKPEASVLPDCLLLMMYEPKLSMEVSKETWVCSTDFIRCVPTREKKAAPPPAPKKREIKTAGKHTQTQVAIQPGRWSCSFPAAAAAAAMIEQKLERAKGGYEPFVLTRCKSEPMRSSAKLAPDTGFCKDRNLEPHRPATFGIGAAGVGF 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2820509 2822845 - CmaCh04G005570.1 Cma04g00557 291638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00557 778 MobiDBLite consensus disorder prediction 393 635 - -
Cma04g00557 778 MobiDBLite consensus disorder prediction 610 628 - -
Cma04g00557 778 MobiDBLite consensus disorder prediction 445 470 - -
Cma04g00557 778 MobiDBLite consensus disorder prediction 337 363 - -
Cma04g00557 778 MobiDBLite consensus disorder prediction 677 691 - -
Cma04g00557 778 Coils Coil 520 547 - -
Cma04g00557 778 MobiDBLite consensus disorder prediction 31 47 - -
Cma04g00557 778 Coils Coil 375 433 - -
Cma04g00557 778 MobiDBLite consensus disorder prediction 561 575 - -
Cma04g00557 778 MobiDBLite consensus disorder prediction 490 546 - -
Cma04g00557 778 Coils Coil 437 457 - -
Cma04g00557 778 MobiDBLite consensus disorder prediction 397 431 - -
Cma04g00557 778 MobiDBLite consensus disorder prediction 31 102 - -
Cma04g00557 778 MobiDBLite consensus disorder prediction 57 80 - -
Cma04g00557 778 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 3 778 - -
Cma04g00557 778 MobiDBLite consensus disorder prediction 673 693 - -
Cma04g00557 778 MobiDBLite consensus disorder prediction 217 236 - -
Cma04g00557 778 PANTHER CHLOROPLAST PROTEIN HCF243 3 778 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00557 - - - cpep:111797130 1181.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00557 Cma16g00408 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00408 Cma-Chr16:2031318 Cma04g00557 Cma-Chr4:2820509 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g160 . . . Bda09g00533 . . . . Cmo16g00440 Cmo04g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00777 . . Bpe01g00452 Bma07g01161 . . . . Cma04g00557 Cma16g00408 Car04g00527 . . Cpe01g00500 . . . . . . . Cla05g00994 Cam05g1085 Cec05g1093 Cco05g1087 Clacu05g1079 Cmu05g1029 Cre05g1103 . . Chy06g01170 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008790 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00557 Cma_Chr04 FPKM 14.558408 16.599699 4.956161 4.92105 41.772228 42.86372 40.964912 0.525484 0.610036 0.617027