Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00560 ATGAGGCAGAGGTTACCACGCACTAGTCAGATGGTTGATATGGAAATGGATCGACAAGGTCAGAATTATCTTCATGCTGAGCCATCCATCATTCTGCCAGGCACATCTAACTTCCCTCAGCATAGTATACCCGCAATGGTTACAGCTTCAGGGAATGCAGCAAATCCAGAGGCTCATTATCTTCCCGATCCTTACGAAGGTCCTATGTTACATGGTTTAAATCAGTACAGTGGTGTTCAACATCATCATAGTTTAGGTTTAAGTACTGCAGCTCCTGGAAACTATTATTACTCTTATGTTACTCCGCCATCTAGTAATGGGTTGTTACCTGCACCTCTAAATCATAATGTAACCGACCAGCTGCCATCTGCTAGCAATTATGGGGTCATTCAAACTTCTTCTGATGGCTATGGTAGGAGGGCATATTTTGTGGATGAAGTTAGTGATCCACACAAGAGAAAGATTACAGAAGGGATTCCTGGGAATGTTCAACACTTGAATGGTCTGGCCAGCTCTAGTTCTTCAGTGCATTTGTCAAATTCAAGGCATCCCGAAGAGGTTGCTATGGTTGAAGCATCATCTTTTCCCCCACCTCAGAGTAGATGGAATGGACCTCGGAATAGTGTTAGAGCTGGATCAAGTGGAACTAGGCGCGACTCTCTTCTACCACTTGACCATAGTCATACAACTCTTGGAAATAATAGGGGTCAACACCTTCAGCCTGCAAATTCTACTTTCTGGTTGGACCAACACTTACAGGCTAATTGTGGCAATAGAAATGCTTCATCTTGGAATCAAGCCTCTACTGCACCTTTCATGCAAGGAACTAATACAAATGGAGGTTTGTTGGAAACCATGAATCTGGGTGTGTACGGATATCATGAAACGGCGGGAAACAGGAATTCTAGAAATGTTCAACATCCTTCCTTAAACCATGGCCAACATATTCACAATCACCCATCTACGGTCGTGCAAAGAATTAGAGGCCAAAATTTCCAGTACTACCCCCAAGTGACGGCAGCTTCATATGGATTTCCTTTGAATTCTTCATATGGCACCATGAATCCTCATAGTCTGGACATAGGGCGTAGGCGACAAGGGCCAGTTGCACCTACTAGCCATGGGCTGCACCGGCTTCCACGAGTGAATGTTGCTGCTGACACTACAAATAGACACCATAACCTTCCTCAGTTGAGATTCTTGCAGGCTGATGAAGTTGCATTACTGGAAATACCCGACTTATATGAAGTGGGGAATTCTGTTGACCATCACAGGGACATGCGATTGGATATAGAGGACATGTCTTATGAGGAACTTCTCGCTTTAGGGGAGCGAATTGGGAACGTCAGCACTGGGTTAACAGAGGAAATCATTAAAGCCCAATTGAAGACGAGGAGCTTTGTATCATCTGTAACAGTTGTTAATCTGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGTTCGAGTTCGGATCAGGATGCCGATTACTGTATCATTTGCCAGGATCACTATCAGAACCATGAGAAAATTGGAACGCTTGATTGCGGACACGAGTACCATGCAAGTTGCTTAAAGAAGTGGCTAACTGTCAAGAATGTCTGTCCCATCTGCAAATCAGAAGCATTGGTGACGGTTAGAAAGGAACGATGA 1647 44.63 MRQRLPRTSQMVDMEMDRQGQNYLHAEPSIILPGTSNFPQHSIPAMVTASGNAANPEAHYLPDPYEGPMLHGLNQYSGVQHHHSLGLSTAAPGNYYYSYVTPPSSNGLLPAPLNHNVTDQLPSASNYGVIQTSSDGYGRRAYFVDEVSDPHKRKITEGIPGNVQHLNGLASSSSSVHLSNSRHPEEVAMVEASSFPPPQSRWNGPRNSVRAGSSGTRRDSLLPLDHSHTTLGNNRGQHLQPANSTFWLDQHLQANCGNRNASSWNQASTAPFMQGTNTNGGLLETMNLGVYGYHETAGNRNSRNVQHPSLNHGQHIHNHPSTVVQRIRGQNFQYYPQVTAASYGFPLNSSYGTMNPHSLDIGRRRQGPVAPTSHGLHRLPRVNVAADTTNRHHNLPQLRFLQADEVALLEIPDLYEVGNSVDHHRDMRLDIEDMSYEELLALGERIGNVSTGLTEEIIKAQLKTRSFVSSVTVVNLEEEEEEEEEGSSSDQDADYCIICQDHYQNHEKIGTLDCGHEYHASCLKKWLTVKNVCPICKSEALVTVRKER 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2847238 2851830 + CmaCh04G005600.1 Cma04g00560 291641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00560 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 541 IPR013083 -
Cma04g00560 548 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 541 IPR045191 GO:0061630
Cma04g00560 548 MobiDBLite consensus disorder prediction 196 215 - -
Cma04g00560 548 PANTHER OS04G0185500 PROTEIN 2 541 - -
Cma04g00560 548 SMART ring_2 496 536 IPR001841 -
Cma04g00560 548 MobiDBLite consensus disorder prediction 194 237 - -
Cma04g00560 548 Pfam Ring finger domain 495 537 IPR001841 -
Cma04g00560 548 ProSiteProfiles Zinc finger RING-type profile. 496 537 IPR001841 -
Cma04g00560 548 SUPERFAMILY RING/U-box 470 541 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00560 K19041 RNF38_44; E3 ubiquitin-protein ligase RNF38/44 [EC:2.3.2.27] - cmos:111447585 1095.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00560 Cma09g00834 CCT
Cma04g00560 Cma16g00414 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00560 Cma-Chr4:2847238 Cma09g00834 Cma-Chr9:4100613 3.00E-74 dispersed
Cma16g00414 Cma-Chr16:2064349 Cma04g00560 Cma-Chr4:2847238 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g154 . . . . . . Bma10g00486 . Cmo16g00446 Cmo04g00597 . Cma09g00834 . Car09g00749 . Cpe06g00665 . Bhi09g03477 Tan01g0842 . . . Mch11g1034 . Cla11g01729 Cam11g1799 Cec11g1820 Cco11g1826 Clacu11g1958 Cmu11g1768 Cre11g2176 Cone6ag0178 Cone9ag0203 Cone14ag1042 Cone15ag1031 Lsi04g02037 Csa04g02309 Chy07g00045 . Blo07g00959 . Bda05g00779 . . Bpe03g00847 . . . . Cmo09g00829 Cma04g00560 Cma16g00414 Car04g00531 Car16g00379 Cpe14g00348 Cpe01g00505 . . . . . . . Cla07g00940 Cam07g1015 Cec07g1086 Cco07g1064 Clacu07g0985 Cmu07g0981 Cre07g1355 . . Chy07g00954 Cme07g01321
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003539 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00560 Cma_Chr04 FPKM 34.120766 36.520302 20.283003 19.478916 21.214899 19.598284 22.290031 16.306101 15.999089 15.29111