Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00562 ATGGTGAGCTTCTTGAACACGTCATTACGTGATTTCGATCGTGAATCTAGTTGCGTGGGGGAATCACCGATCATTGGAACCGCCGCGTGTTCTCCGGTGCCGTTTTCCGGTTTCAATAGTCTCCACAATCGATCATCATCTTCATCTGCTTTTTATTCTTCTTCAGTTTCAATGGCTGCTCAATCGGTCGGCGAAATGGACGGCGAAAATTTCCCTTCCGACCTCGCTTACCAGTCCGGCTTCAACAATCATTTCTCGTCGGAGGCTATTCCCGGTGCTCTTCCTCAATTGCAAAACAGTCCTCTGATATGCCCGTACGGCCTCTATGCCGAGCAGATCTCTGGCACTTCCTTCACATCGCCTCGCAAAGTCAACATGTGCAGTTGGCTGTATCGAATTAAGCCGTCGGTCACGCATGAACCGTTTAGGCCACGTTTGCCTAAAAACGAGAAGTTGATCAGTGAATTTAATGCGTCAAATTGTTCGTCGACTCCGACTCAGCTAAGGTGGAGACCGGCGGATGTTCCTGATTCACCGCTGGATTTCGTTGATGGTCTGTACACTGTTTGTGGAGCCGGCAGTTCGTTTCTTCGGCATGGTTTTGCTATTCACATGTACACAGCCAATAAGTCAATGGAGAACTGTGCGTTCTGTAATGCTGACGGCGACTTCTTGATAGTCCCTCAGAGTGGAAGGCTGTGGATTATTACCGAGTGTGGAAGACTGGAAGTTTCTCCTGGTGAAATAGTGGTTTTACCTCAAGGTTTTCGCTTTGTTGTTTATCTGCCTGATGGTCCATCACGTGGCTACGTAGCTGAGATTTTTGGCAGTCATTTTCAGCTTCCTGATCTCGGACCAATAGGTGCTAATGGTCTTGCTGCACCAAGGGATTTTCTTGCCCCTGTAGCCTGGTTTGAAAATATTTCTCGTCCCGGTTACACAATTGTGCAAAAATATGGTGGGGAATTGTTTACTGCCATACAGGACTTTTCTCCCTTTAATGTAGTTGCCTGGCATGGTAATTATGTTCCCTATAAGTACGATCTTAGTAAGTTCTGCCCTTACAATACTGTGTTGTTTGATCACAGTGATCCATCAATAAATACAGTATTAACGGCACCAACTGATAAACCCGGAGTAGCGTTACTCGACTTTGTCATTTTCCCTCCAAGATGGCTTGTCTCTGAACACACATTCCGCCCCCCATATTACCATCGCAACTGCATGAGTGAATTCATGGGTCTCATATATGGAGGCTACGAGGCAAAAGCTGACGGGTTCCTTCCTGGGGGTGCCAGCCTTCATAATTGCATGACTCCCCATGGCCCCGATACTAAAACGTACGAGGCCACTATTGCTCGAGGAAACGAGGCTGGACCTTATCGAATCACCGACACAATGGCATTTATGTTTGAATCAAGTCTGATCCCTCGCGTATGCTCTTGGGCTCTGGAGTCTCCATGCATGGATCATGACTACTACCAATGCTGGATAGGATTGAAATCTCATTTCACAAGTGAAGGAACAACTAGAGACATGGATCCACGGAAGGTAAAAACTGATGTTGAAAATGGAAGACAGACTGTGTAG 1590 46.79 MVSFLNTSLRDFDRESSCVGESPIIGTAACSPVPFSGFNSLHNRSSSSSAFYSSSVSMAAQSVGEMDGENFPSDLAYQSGFNNHFSSEAIPGALPQLQNSPLICPYGLYAEQISGTSFTSPRKVNMCSWLYRIKPSVTHEPFRPRLPKNEKLISEFNASNCSSTPTQLRWRPADVPDSPLDFVDGLYTVCGAGSSFLRHGFAIHMYTANKSMENCAFCNADGDFLIVPQSGRLWIITECGRLEVSPGEIVVLPQGFRFVVYLPDGPSRGYVAEIFGSHFQLPDLGPIGANGLAAPRDFLAPVAWFENISRPGYTIVQKYGGELFTAIQDFSPFNVVAWHGNYVPYKYDLSKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVSEHTFRPPYYHRNCMSEFMGLIYGGYEAKADGFLPGGASLHNCMTPHGPDTKTYEATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGLKSHFTSEGTTRDMDPRKVKTDVENGRQTV 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2862063 2865925 + CmaCh04G005620.1 Cma04g00562 291643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00562 529 Gene3D Jelly Rolls 337 475 IPR014710 -
Cma04g00562 529 Pfam Homogentisate 1,2-dioxygenase C-terminal 350 504 IPR046451 -
Cma04g00562 529 MobiDBLite consensus disorder prediction 507 529 - -
Cma04g00562 529 Pfam Homogentisate 1,2-dioxygenase N-terminal 76 349 IPR046452 -
Cma04g00562 529 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 70 506 - -
Cma04g00562 529 MobiDBLite consensus disorder prediction 507 523 - -
Cma04g00562 529 TIGRFAM hmgA: homogentisate 1,2-dioxygenase 75 504 IPR005708 GO:0004411|GO:0006559|GO:0006570
Cma04g00562 529 CDD cupin_HGO_N 168 276 - -
Cma04g00562 529 SUPERFAMILY RmlC-like cupins 74 506 IPR011051 -
Cma04g00562 529 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 70 506 IPR005708 GO:0004411|GO:0006559|GO:0006570
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00562 K00451 HGD, hmgA; homogentisate 1,2-dioxygenase [EC:1.13.11.5] - csv:101206356 916.376
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g149 . . . . . . . . . Cmo04g00599 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1041 Cone15ag1030 . . . . . . . . . . . . . . . Cma04g00562 . Car04g00533 . . Cpe01g00507 . . . . . . . Cla07g00942 Cam07g1018 Cec07g1088 Cco07g1066 Clacu07g0987 Cmu07g0983 Cre07g1357 . . Chy07g00956 Cme07g01326
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009963 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00562 Cma_Chr04 FPKM 7.703184 7.716033 26.414762 26.088272 5.915548 5.35684 4.948285 20.202259 19.078094 17.62529