Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00564 ATGAATGGCAGAACTTTTTGGGAGAGGCAGACGAGGCGGCAGAATCTTCAGCAGCAGCAGAAGCAACAGCTGGAAGAAGGAAAGCAAAACAGTCCGAGTCTGGATCCTCAAGGAAATCGCCATCATCATCATCAGAACCAGATTCTAAATTCGAGGCATGTAGAAGGAAAAGAGGAGGAAGACGACCAAGATTCTCCGCCCCACCACCGCCAAGACCACCATAACCTCCATCAGCAGCAATCGCAGCCCTTCAATGTGCACCAGGATCAGCATCTTTTTCTTCAAAACACCCACCAAGACGACCAAAGTCTACAAAATTACTACGCAGCTTTAGATTCACAGTCACAACAACAACAAACCCACCAGCAGCAAGCCCCCAAGAAACGCTCTTACTTTCAGCTTCCTCCTCCTCATCCTGTGGCGGCACCTGCCGCCTCTGCCTCCACTTTTGCCGACCAGAGCATCGAATATGCGAGAAAAATGGGTGAGAGCCACCGCCAAACAACAACGTCGTCAAGGCTGGGGATGAGAACCGGCGGGGGCGGCGGCGAGATCGTGGAGGTTCAAGGAGGCCACATTGTTCGTTCCACTGGAAGAAAAGATCGTCACAGCAAAGTTTGCACCGCCAAAGGCACAAGAGACCGCCGGGTTCGCCTCTCGGCCCATACCGCCATCCAGTTCTACGATGTTCAAGACCGCCTCGGCTACGACCGACCCAGTAAAGCTGTAGACTGGCTTATCAAAAAGGCCAAGGCCTCCATTGACGAGCTCGCCGAGCTCCCTGCATGGAATCCGAGCACAGCTAACGCATCCACACAGCGGCAGGAGCAGCAGAGCCTAAACGATGAGAACGAGAGTCTACTTTCTGTCCAACGTGATGTCTTCAGTCCAACCGGTAATCGGAGAGCTTCGGTGGTGGGGAGCCACAGCAGAGTTTCAGAGTTTCCTCTGCAAAACTTGCAGCATACCCAAATGGGGGGAGGCCCAAATAACAGCACCTCGAGCTTTCTCCCACCGTCGTTGGACTCGGACTCCATTGCTGATACCATCAAGTCCTTCTTCCCCGTTGGCACGGCGGCGGCGGAGACCACCTCATCGTCCATTCAGTTCCAGAATTTCCCACAAGATTTGCTTTCCAGGACGAGTAGCCAGAACCAAGATCTGCGTCTTTCTTTGCAATCTTTTCAAGACCCAATAGCTATTCACCGGCACCATCATGCTCAGCACCAGAGTCAAGGTCATCAGAATGATCACGTTTTATTCCCCGGCACCGCCACATTAAGTGGGTTTGATGTGACCACCGCTGGTTGGTCTGAGCACAACAACCTCAATCCGGCGGAGATTAGCCGGTTCCCGAGGATAACTTCCTGGAATGCATCTGGTGCAGAAACTGGTAGTAGCGGCAGCAGTGGCCATGGCGGAGCTGCGATTAGAAGTGCAGGATATGTCTTCAACTCGCCTCACTTGTCAACTGCACTGCCACCGTCGTCACTTATGCAGCCATTATTTGGTGAAAACCAGTTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACACCTTCAATTCGCGCTTGGATTGATCAATCACTTACAGCTACTGATCATCAACAGCATCACATGCCACCATCGATCCACCAATCTTCCTACACAAGTTTAGGATTCGCCTCAGGCGGGTTCTCCGGGTTTCACATTCCAACGCGAATTCAAGGTGATGAGGAGCACAATGGCATTTCAGACAAGCCATCCTCTGCTTCCTCTGATTCTCGCCATTGA 1776 52.2 MNGRTFWERQTRRQNLQQQQKQQLEEGKQNSPSLDPQGNRHHHHQNQILNSRHVEGKEEEDDQDSPPHHRQDHHNLHQQQSQPFNVHQDQHLFLQNTHQDDQSLQNYYAALDSQSQQQQTHQQQAPKKRSYFQLPPPHPVAAPAASASTFADQSIEYARKMGESHRQTTTSSRLGMRTGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGTRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDELAELPAWNPSTANASTQRQEQQSLNDENESLLSVQRDVFSPTGNRRASVVGSHSRVSEFPLQNLQHTQMGGGPNNSTSSFLPPSLDSDSIADTIKSFFPVGTAAAETTSSSIQFQNFPQDLLSRTSSQNQDLRLSLQSFQDPIAIHRHHHAQHQSQGHQNDHVLFPGTATLSGFDVTTAGWSEHNNLNPAEISRFPRITSWNASGAETGSSGSSGHGGAAIRSAGYVFNSPHLSTALPPSSLMQPLFGENQFFSQRGPLQSSNTPSIRAWIDQSLTATDHQQHHMPPSIHQSSYTSLGFASGGFSGFHIPTRIQGDEEHNGISDKPSSASSDSRH 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2876257 2878146 - CmaCh04G005640.1 Cma04g00564 291645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00564 591 MobiDBLite consensus disorder prediction 37 76 - -
Cma04g00564 591 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 161 591 IPR005333 GO:0003700
Cma04g00564 591 MobiDBLite consensus disorder prediction 265 285 - -
Cma04g00564 591 MobiDBLite consensus disorder prediction 1 77 - -
Cma04g00564 591 PANTHER TRANSCRIPTION FACTOR TCP4 161 591 - -
Cma04g00564 591 MobiDBLite consensus disorder prediction 568 591 - -
Cma04g00564 591 MobiDBLite consensus disorder prediction 112 129 - -
Cma04g00564 591 MobiDBLite consensus disorder prediction 1 36 - -
Cma04g00564 591 ProSiteProfiles TCP domain profile. 199 257 IPR017887 -
Cma04g00564 591 MobiDBLite consensus disorder prediction 112 147 - -
Cma04g00564 591 MobiDBLite consensus disorder prediction 321 340 - -
Cma04g00564 591 MobiDBLite consensus disorder prediction 564 591 - -
Cma04g00564 591 MobiDBLite consensus disorder prediction 162 186 - -
Cma04g00564 591 Pfam TCP family transcription factor 198 304 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00564 - - - csv:101206841 690.649
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00564 Cma09g00829 CCT
Cma01g01238 Cma04g00564 CCT
Cma04g00564 Cma09g00829 ECH
Cma01g01238 Cma04g00564 ECH
Cma04g00564 Cma16g00416 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01238 Cma-Chr1:8907193 Cma04g00564 Cma-Chr4:2876257 8.62E-140 dispersed
Cma02g00071 Cma-Chr2:342641 Cma04g00564 Cma-Chr4:2876257 8.16E-37 dispersed
Cma04g00564 Cma-Chr4:2876257 Cma09g00829 Cma-Chr9:4069454 5.97E-137 dispersed
Cma13g00616 Cma-Chr13:5969505 Cma04g00564 Cma-Chr4:2876257 1.01E-20 dispersed
Cma16g00416 Cma-Chr16:2078869 Cma04g00564 Cma-Chr4:2876257 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g139 . Blo03g01560 . . Bpe09g00248 . Bma10g00483 Bma13g00938 . Cmo04g00603 Cma01g01238 Cma09g00829 Car01g01059 Car09g00744 Sed05g1931 Cpe06g00660 Cpe02g00679 Bhi09g03492 Tan01g0851 Cmetu05g0164 . Hepe01g1426 Mch11g1026 . Cla11g01722 Cam11g1791 Cec11g1812 Cco11g1818 Clacu11g1950 Cmu11g1760 Cre11g2169 Cone6ag0182 Cone9ag0207 Cone14ag1037 Cone15ag1023 Lsi04g02029 Csa04g02301 Chy07g00036 Cme07g00547 Blo07g00961 Blo10g00746 Bda05g00782 Bda12g00823 . . . . . Cmo01g01290 Cmo09g00822 Cma04g00564 Cma16g00416 Car04g00535 Car16g00381 Cpe14g00350 Cpe01g00509 . . . . . . . Cla07g00946 Cam07g1021 Cec07g1091 Cco07g1070 Clacu07g0990 Cmu07g0986 Cre07g1361 . . Chy07g00959 Cme07g01329
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001202 4 3 4 3 3 1 4 2 1 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 2 2 2 3 3 1 75
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34778 PF03634 TCP 7.60E-30 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00564 Cma_Chr04 FPKM 1.868243 2.108563 2.587796 3.048405 105.802444 104.5625 101.786491 0.500254 0.108563 0.164891