Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00565 ATGGCTTCAGTGCTGCGAGGTGGTGGTGAACCGGGAGGGAATCCCAGGAGGACGGATAATAACAAGTTTAGTACCGGAAACCAACGGAAAGAGAGTAAAATCCCCAAAAGTGCTCGAAATTCCGTACAGATTCCTGCCATCGCGGCCGCCAATGGCGGTGGTGATCCGTCTTCTCCTTCTCATTATCCGATCGATGCTTTAGTCACGTCTAGGGATTCTTCAGGTCAAAATCGCTACATCGAACAGGTTAATGCTGATGAAGTGCCGGGATATACGCGGTTTGAGAACCGGGTTAGGATTTGCTTGAATTCCAGATCAAGATCTGAGATTAAAGAGCTTACGACGAAGCTTAAGGGCGAGCTCGGTCACGTCAGGAGCCTCGTGAAGAAATTTGAATCTCAAGAACTGCAGATCAGTGGTTATGGTGGTGATGTTGGACATAGTCAGTCGCAGTTTTCTGCTAATAATTTGGTAGAGAAGGTTGGTAACACATGGAAGAATGATTCTGTGGTGGGTTCCGCCGATGTGCCCGCTTCTCGACTTGTTCAAAGCGTTTCGGTGGCCGAAAACTTCGGGGAGTTTGCAGAGAAAGAGATGAACAAGCATAAAAATTCAAGATATAATCCTAAGACGGAGTTCCCGGTATCGGATTGCGATTCGAATAGAGGTAAGATTGATCCATTGCTTAAAAGCTGTAACAATTTGCTGGAAAGATTGATGAAACATAAACATGGTTGGGTGTTTAATGTGCCTGTTGATGCCAAGCGTTTGGGGCTTCATGATTATCACAAGATCATAACGAAGCCAATGGACTTAGGTACTGTAAAGATGAGATTAAACAAGAACTGGTACAAGTCACCAAGAGAGTTTGCTGAGGATGTGAGACTCACATTTAGTAATGCCATTACATATAACCCGAAAGGGGAGGACGTTCATATAATGGCTGAGCAGTTATCGAACGTATTCGAAGAGAAATGGAGGATTATTGAAGCCAAACAAGATGTTGGTAAGGATGATGGATCCAGAAAATCTCCAGCTCTTGCCACACCGCCAGTGGAATCAAGAACTTTCAGTAAATCGAAGTCTACGACGAAGCCTCCGCCTGCAAATAGGGAGAGTTTAGGTAAGTCGGATTCGATAACAAAGCCTGCAAACGTTCCTGATAAGAAACCAAATGCTAAGAATCATGGAAACAGAGATATGAATTATGAAGAAAAGCAGAAACTGAGCATTGATCTTCAGGATTTACCATCAGATGAGCTGAATAATGTTGTGAAGATCATTAAAAAGAGGAACCAGGGACTCTTCCAAAACGATGATGAAATTGAGTTGGATATTGGTAGTGTTGACTCCAAAACCCTCTGGGAACTCGAGAGGTTTGTGGCTGATTACAAAAACAGCTTGATCACGAACAAGAGAAAAGTCGACGCCGATCTTCAATCATCGCGCTACTCGACCAAGGATATGGATCGAGCTGTGGATGATGCAGGAGGAGGACCTGTAGGCGGCAATGCAGACTCTGAAGGTGAGGGCGACAGTTCCTCGACGTGTGGAGATGCGAATCAGTCTCCCTAG 1575 44.83 MASVLRGGGEPGGNPRRTDNNKFSTGNQRKESKIPKSARNSVQIPAIAAANGGGDPSSPSHYPIDALVTSRDSSGQNRYIEQVNADEVPGYTRFENRVRICLNSRSRSEIKELTTKLKGELGHVRSLVKKFESQELQISGYGGDVGHSQSQFSANNLVEKVGNTWKNDSVVGSADVPASRLVQSVSVAENFGEFAEKEMNKHKNSRYNPKTEFPVSDCDSNRGKIDPLLKSCNNLLERLMKHKHGWVFNVPVDAKRLGLHDYHKIITKPMDLGTVKMRLNKNWYKSPREFAEDVRLTFSNAITYNPKGEDVHIMAEQLSNVFEEKWRIIEAKQDVGKDDGSRKSPALATPPVESRTFSKSKSTTKPPPANRESLGKSDSITKPANVPDKKPNAKNHGNRDMNYEEKQKLSIDLQDLPSDELNNVVKIIKKRNQGLFQNDDEIELDIGSVDSKTLWELERFVADYKNSLITNKRKVDADLQSSRYSTKDMDRAVDDAGGGPVGGNADSEGEGDSSSTCGDANQSP 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2886130 2889124 + CmaCh04G005650.1 Cma04g00565 291646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00565 524 MobiDBLite consensus disorder prediction 480 524 - -
Cma04g00565 524 MobiDBLite consensus disorder prediction 17 31 - -
Cma04g00565 524 ProSiteProfiles Bromodomain profile. 240 312 IPR001487 GO:0005515
Cma04g00565 524 Pfam Bromodomain extra-terminal - transcription regulation 401 462 IPR027353 -
Cma04g00565 524 MobiDBLite consensus disorder prediction 351 380 - -
Cma04g00565 524 PANTHER TRANSCRIPTION FACTOR GTE4-LIKE ISOFORM X1 3 523 - -
Cma04g00565 524 PANTHER OSJNBA0053K19.4 PROTEIN 3 523 - -
Cma04g00565 524 Gene3D - 394 472 IPR038336 -
Cma04g00565 524 ProSiteProfiles NET domain profile. 391 472 IPR027353 -
Cma04g00565 524 SMART bromo_6 221 331 IPR001487 GO:0005515
Cma04g00565 524 SUPERFAMILY Bromodomain 219 332 IPR036427 GO:0005515
Cma04g00565 524 MobiDBLite consensus disorder prediction 508 524 - -
Cma04g00565 524 PRINTS Bromodomain signature 243 256 IPR001487 GO:0005515
Cma04g00565 524 PRINTS Bromodomain signature 259 275 IPR001487 GO:0005515
Cma04g00565 524 PRINTS Bromodomain signature 275 293 IPR001487 GO:0005515
Cma04g00565 524 PRINTS Bromodomain signature 293 312 IPR001487 GO:0005515
Cma04g00565 524 Gene3D - 197 343 IPR036427 GO:0005515
Cma04g00565 524 MobiDBLite consensus disorder prediction 1 64 - -
Cma04g00565 524 MobiDBLite consensus disorder prediction 480 494 - -
Cma04g00565 524 CDD Bromo_plant1 228 326 IPR037377 -
Cma04g00565 524 MobiDBLite consensus disorder prediction 333 401 - -
Cma04g00565 524 Pfam Bromodomain 232 316 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00565 - - - bhj:120086113 758.059
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00565 Cma16g00417 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00565 Cma-Chr4:2886130 Cma11g01922 Cma-Chr11:12679656 5.75E-98 dispersed
Cma16g00417 Cma-Chr16:2086132 Cma04g00565 Cma-Chr4:2886130 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g137 . . . . . . Bma10g00481 . Cmo16g00449 Cmo04g00605 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1035 Cone15ag1021 . . . . . . Bda05g00783 . . Bpe03g00850 . . . . . Cma04g00565 Cma16g00417 Car04g00536 Car16g00382 Cpe14g00351 Cpe01g00510 . . . . . . . Cla07g00947 Cam07g1022 Cec07g1092 Cco07g1071 Clacu07g0991 Cmu07g0987 Cre07g1362 . . Chy07g00961 Cme07g01330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003323 2 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 9 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00565 Cma_Chr04 FPKM 1.891773 2.498147 3.511908 4.199606 2.077257 1.428279 1.300756 8.922831 9.134836 8.928889