Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00568 ATGCCATACATTCACATGAAATTATTAGGTGCAACAGTATCTGTTAATCTTGCTCCAAATTCTGCTATCTGGAAGACTTTCTATTACCCAGTTGCCAACGTCAATCTTCCATCAAATGTGATGCCAATGAATCAGCAGATATCTATATGCAGGAATGATTCATTATCTTCTCCTTTCAATGTCTTCAACAGAACAAATTCTTCCCAGTCCTTGCTGTTCATTGTTGCTGAGGGTAGAATTTCCAACTCTGGTGAGTGCTACAAGTCTAAATGTTCCTCGGGTTCCTTTGAGAAGCAGGTTTCGAGCAGAAATATCGGCGATGACGATTGCCCAGAAAATTGTGAAACTGAAAATGACAAGGAGTGGCAAAGACGAAGAAAAATAGGAGTGGCAAATAAGGGCAAAGTACCATGGAACAAGGGCAAGAAACACAGCTTGGAAACTCGTAAGCGAATCAAGCAGAGAACAATTGAAGCCTTGAAAAACCCCAAGGTGAGGAGGAAGATGTCCGAATATCCCCGCCCCACTCATAGTGATCAGGTCAAAACTAAAATTAGCTCCTCACTCAGACGTGTATGGGGAAAGAGATTATTGAAGAAGAGATTAAACGAGGCATTCTTCCGGTCTTGGAAGGAAAGCATAGCTGTTGCTGCGAAGAAAGGAGGGAAGGAAGAACAAGAACTTGACTGGGACAGCCATGACAAGATAATACAAGAAATGCTTCATCAAAAGCTTAAAATGGTTGAAGAGAAGGAAAAATTAAAGCTGATGAGAGCAGAGAATGCGAAAAAGAGGAAAATCCAAGGAAGGGGTGCCAAAATAAAGAAAAGGAAAATGTGTTCTAGAAGAAGAAATGGAGGAAAAAGAAAGATGAAAGAGGTAGAAGACATCCAGAGAACGTTGAAGGAGCTAACTGCAATTGAAAGATCGAGACTTAAGCAAAGATTGAAGAAGATTCGCAAAAAGATTGCAATAAACAGTGTAGTTGCTGCTCAAGGAAGCGTTGCATCAGTGGTGCCCCGAGGCACAACCTGGGAAAAACTGGATCTAGATCTTATAAAGAAGGGTAAACTGAGGGAAGGAGTGTCGCTGGCAGATCAAATTCAATTTGCCAAGATCAGAAAAGCAGAATCTATAGCTTGCAAAATTCTTGTAGCCTCTACTTTGTCGTACGGATGCGCCGGGGAGCGTAAAGATAACTTTTGA 1206 41.46 MPYIHMKLLGATVSVNLAPNSAIWKTFYYPVANVNLPSNVMPMNQQISICRNDSLSSPFNVFNRTNSSQSLLFIVAEGRISNSGECYKSKCSSGSFEKQVSSRNIGDDDCPENCETENDKEWQRRRKIGVANKGKVPWNKGKKHSLETRKRIKQRTIEALKNPKVRRKMSEYPRPTHSDQVKTKISSSLRRVWGKRLLKKRLNEAFFRSWKESIAVAAKKGGKEEQELDWDSHDKIIQEMLHQKLKMVEEKEKLKLMRAENAKKRKIQGRGAKIKKRKMCSRRRNGGKRKMKEVEDIQRTLKELTAIERSRLKQRLKKIRKKIAINSVVAAQGSVASVVPRGTTWEKLDLDLIKKGKLREGVSLADQIQFAKIRKAESIACKILVASTLSYGCAGERKDNF 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2899580 2902576 + CmaCh04G005680.1 Cma04g00568 291649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00568 401 Pfam NUMOD3 motif 125 152 IPR003611 GO:0003677
Cma04g00568 401 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC-LIKE PROTEIN 6 387 - -
Cma04g00568 401 PANTHER NUMOD3 MOTIF FAMILY PROTEIN, EXPRESSED 6 387 - -
Cma04g00568 401 MobiDBLite consensus disorder prediction 268 287 - -
Cma04g00568 401 MobiDBLite consensus disorder prediction 265 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00568 - - - cpep:111779131 711.449
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00568 Cma-Chr4:2899580 Cma14g01224 Cma-Chr14:9727875 4.71E-21 dispersed
Cma04g00568 Cma-Chr4:2899580 Cma01g00020 Cma-Chr1:80394 2.38E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g130 . . . . . . . . . Cmo04g00608 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1030 Cone15ag1015 . . . . Blo07g00963 . Bda05g00786 . . . . . . . . Cma04g00568 . Car04g00539 . . Cpe01g00514 . . . . . . . Cla07g00954 Cam07g1028 Cec07g1098 Cco07g1077 Clacu07g0997 Cmu07g0993 Cre07g1368 . . Chy07g00967 Cme07g01338
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010897 2 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00568 Cma_Chr04 FPKM 1.326233 1.32963 1.087685 0.569379 7.901083 7.826701 9.161964 0.435022 1.100223 0.515311