Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00570 ATGGCGACTCGGCTCTTCTACCGCACGCTACCTAAAACCCTGATTTCGGCTTCCATATTCTCTCGTTCATTTCTCACTGCCACTGGAACGGCCTTATCCTCCTCTTCACACTCCTCTACCTCCCTTCTCCGTCGCCTTCGTCCCCTCGCTGCTATAGTTGTCGCTGATTTCCGCGGCCTCTCTCCAGCGGCGAGCGCGAGGGAGTTCGCCACCAGTACCACTTCATCCTCTCTCAAAGATCCGAATCTGAACTGGTCTAATCGCCCACCAAAGGAGACCATATTACTTGATGGCTGTGATTTTGAGCACTGGCTCATTGTTATGGAGAAGCCAGAGGGCGATCCCACGAGGGATGAAATTATCGATAGCTTTATCAAAACACTTGCCATGGTTGTCGGAAGTGAGGAAGAAGCTAGGATGAAGATATACTCTGTTTCAACAAGGTGCTACTATGCATTTGGGTGCCTTGTTTCTGAAGAACTTTCTTACAAGATTAAAGAGCTACCTAAGGTTCGTTGGGTCCTTCCTGATTCATACTTGGATGTTAAGAATAAAGATTATGGAGGGGAGCCTTTTATAAATGGTCAGGCTGTNCCATATGACCCGAAGTACCATGAGGAATGGGTAAGAAACAATGCTAGAGCAAATGAAAGGAATAGGCGTAATTCAGACGGGTCAAGAAATTTCAATAGGAGGGAACATACCCGCAACAGAGAATTCCCAAATGCTTCAGCTACTTCAGGACCAGCTCCAAGTAATATGCCACCTCGCAATCATGATGGAATGCCCCAAGGCAACTACAGCAGACCACCGCCGCCACCACCACCAAACACCTTTAACCGACCACCACCACCAAGCAACTTTAGCGGACCACCACCGCCACGACCCAACAACTTTAGTGGACCACCACCACCACCACCACCGAATGACTTTAGCAGACCACCTCCACCACCACAGAACAACTTTAGCGGACCACCACCACCACCACCGCAGAACAACTTTAGGGTACCACCACCGCACAACTATGCACCACCGCCACCATACAACTCCGGGGCACCACCACCACCACCATACAACTCTGGAGAGCCACAGCCAAACAACCATTGGGGAGCACCACCGTCCAACTACTATGGTGGAGCTTCAAACACGGGTGGGCCACCTGCTCAAAACAGCTATAGAGAGATGCAGCCTAATGCTGGTGGGTGGTCTAGTAATGTGCATAACAATCAACGAGAATAG 1239 50.04 MATRLFYRTLPKTLISASIFSRSFLTATGTALSSSSHSSTSLLRRLRPLAAIVVADFRGLSPAASAREFATSTTSSSLKDPNLNWSNRPPKETILLDGCDFEHWLIVMEKPEGDPTRDEIIDSFIKTLAMVVGSEEEARMKIYSVSTRCYYAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNSDGSRNFNRREHTRNREFPNASATSGPAPSNMPPRNHDGMPQGNYSRPPPPPPPNTFNRPPPPSNFSGPPPPRPNNFSGPPPPPPPNDFSRPPPPPQNNFSGPPPPPPQNNFRVPPPHNYAPPPPYNSGAPPPPPYNSGEPQPNNHWGAPPSNYYGGASNTGGPPAQNSYREMQPNAGGWSSNVHNNQRE 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2902890 2905782 - CmaCh04G005700.1 Cma04g00570 291651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00570 412 MobiDBLite consensus disorder prediction 266 362 - -
Cma04g00570 412 MobiDBLite consensus disorder prediction 363 412 - -
Cma04g00570 412 MobiDBLite consensus disorder prediction 215 239 - -
Cma04g00570 412 MobiDBLite consensus disorder prediction 215 412 - -
Cma04g00570 412 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 8, CHLOROPLASTIC/MITOCHONDRIAL-LIKE 16 385 - -
Cma04g00570 412 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 16 385 IPR039206 GO:0016554
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00570 - - - cpep:111810342 401.364
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00570 Cma16g00423 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00570 Cma-Chr4:2902890 Cma17g00344 Cma-Chr17:1866218 1.90E-56 dispersed
Cma16g00423 Cma-Chr16:2113554 Cma04g00570 Cma-Chr4:2902890 6.91E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g129 . . . . Bpe09g00253 . Bma10g00477 . Cmo16g00455 Cmo04g00610 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1029 Cone15ag1014 . . . . Blo07g00964 Blo10g00738 Bda05g00787 . . Bpe03g00852 . . . . . Cma04g00570 Cma16g00423 Car04g00540 Car16g00387 Cpe14g00356 Cpe01g00515 . . . . . . . Cla07g00955 Cam07g1029 Cec07g1099 Cco07g1079 Clacu07g0998 Cmu07g0994 Cre07g1369 . . Chy07g00969 Cme07g01340
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002481 2 4 2 1 2 3 2 2 2 2 1 3 2 5 2 2 3 2 2 3 2 1 1 1 1 1 1 2 1 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00570 Cma_Chr04 FPKM 4.347754 4.203033 4.372864 3.876938 8.529892 8.162243 7.861496 8.500623 8.840718 8.396606