Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00571 ATGCAGTTGGACTCTGTTCGTGTTACTAGATTTGATTCGTTGGATCAGAAATTGAACAATACAGAGGGTGTGATGACTTGTTTCTGTTTCTGTTCAAGAAGAAACAGAGATTCGTTGACTGCCCATACAGCAGCTGCAGAAGCAGCAGCAATCGAAGAGATTTCAAAAATTCCGAACGTTCGCTTGTACTCTTATGAAGAACTTAGAAAAGCAACTGAAAATTTCAGATTTGAAAACAAACTTGGACAGGGAGGCTTTGGATCTGTTTACAAGGGAAGGCTCAGAAATGGAACTCTTGCTGCCATAAAGGTACTATCCATGGACTCAAGCCAAGGAACACGGGAGTTTTTGGCAGAAATCAATGTGATTACGGTTATAAACCATGATAACCTGGTTAAGTTGCATGGTTATTGTGTGGAAGGGCAGCACCGGATTTTGGTCTATCCTTACCTGGAAAATGGCAGCCTTGATAAGATGCTTTTTGGTAGAGGACGAGGAAATATCCAATTCAATTGGCAAACGAGGTGTAAAATATGCATTGGCATTGCACAGGGGCTCACGTTCCTTCATGAGGAAGTTCAGCCCCATGTTGTTCACAGGGACATCAAAGCAAGCAATATCCTGCTTGATAAGGACTTAACTGCAAAAATTTCTGATTTTGGTCTTGCTAGATTACTCCCGTCTCACATGACCCACGTCAGTACATGTATTGCTGGGACAGAAGGTTATCTTGCACCTGAATATGCCATCCGGGGGCAAGCGACAAGAAGAACAGATATTTATAGTTTTGGTGTCTTACTCTTGGAGATTGTATGTGGGAGGTACAACATAAACAAACGGTTGCCTGCTGAGGAACCATATCTTCTAGAAATGGTGTGGAAGCATCATGAGACAGGGCAGTTGCTGGAATTGGTAGACATATCATTACATGGAGACTTTGAGGCTGAAGAGGCTTGCAGATATTTAAAAGTTGGTCTTCTCTGCACTCAAGATATGCCAAATCTCCGGCCATCCATGTCGACCGTTGTCAAGATGCTAACTGGCGACATTGATATAACTGATCAAACAATATCTAAACCTGGAATGCTTTCAGAATTCATGCTTCGAAAAGATGTACTAGGCAAGAAAGCCGAGCCCAATTCGAAGCTTACATCGACGACTGAAGACTTGGGAAAGCAAAGTGAATCAACTTCATCGTCAGGGTTCATGGACACCTCGTACGGTACCATAACCTTCAATTCGATATTTGATCGTAGTAACTGA 1263 42.52 MQLDSVRVTRFDSLDQKLNNTEGVMTCFCFCSRRNRDSLTAHTAAAEAAAIEEISKIPNVRLYSYEELRKATENFRFENKLGQGGFGSVYKGRLRNGTLAAIKVLSMDSSQGTREFLAEINVITVINHDNLVKLHGYCVEGQHRILVYPYLENGSLDKMLFGRGRGNIQFNWQTRCKICIGIAQGLTFLHEEVQPHVVHRDIKASNILLDKDLTAKISDFGLARLLPSHMTHVSTCIAGTEGYLAPEYAIRGQATRRTDIYSFGVLLLEIVCGRYNINKRLPAEEPYLLEMVWKHHETGQLLELVDISLHGDFEAEEACRYLKVGLLCTQDMPNLRPSMSTVVKMLTGDIDITDQTISKPGMLSEFMLRKDVLGKKAEPNSKLTSTTEDLGKQSESTSSSGFMDTSYGTITFNSIFDRSN 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2906180 2911654 - CmaCh04G005710.1 Cma04g00571 291652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00571 420 SUPERFAMILY Protein kinase-like (PK-like) 56 346 IPR011009 -
Cma04g00571 420 Gene3D Transferase(Phosphotransferase) domain 1 151 358 - -
Cma04g00571 420 Gene3D Phosphorylase Kinase; domain 1 45 150 - -
Cma04g00571 420 Pfam Protein kinase domain 76 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00571 420 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Cma04g00571 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Cma04g00571 420 ProSiteProfiles Protein kinase domain profile. 75 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00571 420 MobiDBLite consensus disorder prediction 379 401 - -
Cma04g00571 420 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 60 407 - -
Cma04g00571 420 CDD STKc_IRAK 81 348 - -
Cma04g00571 420 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 60 407 - -
Cma04g00571 420 SMART serkin_6 75 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00571 420 MobiDBLite consensus disorder prediction 377 401 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00571 Cma16g00467 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00571 Cma-Chr4:2906180 Cma16g00467 Cma-Chr16:2360646 4.68E-153 dispersed
Cma04g00571 Cma-Chr4:2906180 Cma04g00629 Cma-Chr4:3229856 3.04E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68469 PF00069 Pkinase 1.80E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00571 - - bhj:120074245 674.085