Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00572 ATGGCAATTTCACGTTTAGTATTGGGACCTTTCTCGCTTCTTCTACGCTGCTCTTTCACACCAACGAAACTCACTCCTCAACTACATTCTCGCAGATACCGCTTCTTCTCCATCCGGGCTGCTATGGCGTCTTCACCTGCTCGCAAGGTTTTGGTTCCGGTTGCGAACGGCACCGAGCCGCTCGAGGCAGTCATCACCATTGACGTGCTTCGACGTTCTGGAGCTGATGTTACCGTCGCTTCCGTGGAGAATCATCTTCGTGTTGATGCAGCTCATCAGATTAAGATTGTTGCTGATTCTCTCATTTCTGATTGCGAGGACACTGTTTTCGATCTCGTCGCACTTCCTGGAGGTATGCCAGGTGCTACCAATTTTAGAGACTGTGCAGTTTTGGAGAACATAGTGAAGAAGCAAGCTGCAGATGGTCGACTTTATGCTGCAATCTGTGCTTCACCGGCAGTGGTGCTTGGCTCATGGGGTTTGCTGAAGGGGTTGAAAGCCACATGCTATCCATCATTTATGGAGCAACTTGGAACTACTGCAACTGCTGTTGAATCTCGAGTACAGATTGATGGCCAAGTAGTGACAAGTCGTGGGCCTGGTACTACCTTGGAGTTTGCTGTTGCGCTGGTTGAGCAGTTGTATGGGAAAGAGAAGGCTGATGAAGTTTCTGCACCTTTGTTGTTGCGTTCCAACCATGGTCATGAATATACTATTGCCGAGTATAATCAAGAGAATTGGACATTTGGTGATGGCCCAAGGATTCTCGTACCTATAGCTAATGGCACTGAGGAAATGGAGGCTGTTATGATCATTGACATTCTTCGACGAGCAAAAGGGAAAGTGGTGGTGGCTTCTGTTGAGGACAAACTAGAGATTCTTGCTTCTCGAAAAGTTAAACTGGAGGCAGATTTACTTCTCGATGAGGCTGCTGAACAGTCATACGACCTAATAGTTTTGCCTGGAGGGCTTGGTGGCGCCGAAGCATTTGCAAAATCTGAAAAACTGATTAATCTGCTAAAGAACCAGAGAGAATCAAACAAACCCTATGGAGCAATATGTGCATCCCCAGCTCTGGTCTTAGAACCCCATGGTTTGTTGAAGGATAAAAAAGCCACTGCTTTTCCTGCATTGTGCGACAAACTGTCCGACAAAAGCGAAATCGAAAACAGGGTGGTAGTTGACGGAAACCTGATTACAAGCAGGGGACCTGGAACTACGATGGAGTTTTCTTTGGCAATCGTGGAGAAGCTGTTTGGAAGGGACATGGCAGTCCAGCTGGGAAAAACAATGGTCTTCATCAGTGAATAA 1311 46.99 MAISRLVLGPFSLLLRCSFTPTKLTPQLHSRRYRFFSIRAAMASSPARKVLVPVANGTEPLEAVITIDVLRRSGADVTVASVENHLRVDAAHQIKIVADSLISDCEDTVFDLVALPGGMPGATNFRDCAVLENIVKKQAADGRLYAAICASPAVVLGSWGLLKGLKATCYPSFMEQLGTTATAVESRVQIDGQVVTSRGPGTTLEFAVALVEQLYGKEKADEVSAPLLLRSNHGHEYTIAEYNQENWTFGDGPRILVPIANGTEEMEAVMIIDILRRAKGKVVVASVEDKLEILASRKVKLEADLLLDEAAEQSYDLIVLPGGLGGAEAFAKSEKLINLLKNQRESNKPYGAICASPALVLEPHGLLKDKKATAFPALCDKLSDKSEIENRVVVDGNLITSRGPGTTMEFSLAIVEKLFGRDMAVQLGKTMVFISE 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2913343 2918787 - CmaCh04G005720.1 Cma04g00572 291653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00572 436 Pfam DJ-1/PfpI family 254 416 IPR002818 -
Cma04g00572 436 Pfam DJ-1/PfpI family 48 213 IPR002818 -
Cma04g00572 436 PANTHER PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED 44 431 - -
Cma04g00572 436 SUPERFAMILY Class I glutamine amidotransferase-like 48 229 IPR029062 -
Cma04g00572 436 Gene3D - 40 242 IPR029062 -
Cma04g00572 436 Gene3D - 250 435 IPR029062 -
Cma04g00572 436 PANTHER BNAA06G01020D PROTEIN 44 431 - -
Cma04g00572 436 CDD GATase1_DJ-1 50 214 - -
Cma04g00572 436 SUPERFAMILY Class I glutamine amidotransferase-like 254 433 IPR029062 -
Cma04g00572 436 TIGRFAM not_thiJ: DJ-1 family protein 49 225 IPR006287 -
Cma04g00572 436 TIGRFAM not_thiJ: DJ-1 family protein 254 427 IPR006287 -
Cma04g00572 436 Coils Coil 284 304 - -
Cma04g00572 436 CDD GATase1_DJ-1 255 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00572 K03152 thiJ; protein deglycase [EC:3.5.1.124] - csv:101212934 754.207
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00572 Cma-Chr4:2913343 Cma11g01744 Cma-Chr11:11572051 1.37E-46 dispersed
Cma04g00572 Cma-Chr4:2913343 Cma01g00322 Cma-Chr1:1549000 2.33E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g126 . . . . Bpe09g00256 . . Bma13g00931 . Cmo04g00612 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00736 . . . . . . . . . Cma04g00572 . Car04g00542 . . Cpe01g00517 . . . . . . . . . . . . . . . Csa04g00801 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012103 0 3 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00572 Cma_Chr04 FPKM 27.932636 30.32906 78.348541 75.187363 37.750416 38.199371 34.976303 132.340897 134.439835 131.78389