Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00575 ATGTCTCTTCGCAGATCGTTTCTCTCTCGGAGGTTTTCCTCAAAGTCGTTGTATAGAGTTCCAAATGGTGTAGGAGATGGAATTCTTCGAGTTGCTTCGTCGGAGGTCGAAGATGGCTCTGGTCAGCTCAGCGGCGGCCGGATGCAGCCTGAATCTGCTTGGTCCTCTATGCTACCGGAGCTTCTTCGGGAGATCATTCAGCGGGTTGAGGCTTCTGAGGATAGTTGGCCTAACCGCCAGAACGTTGTTTCGTGTGCTTGTGTCTGTAAGCGTTGGCGGGATATTACTAAGGAGGTCGCCAGGGCCGCCCCTCTTTCCGGGAAAATTACTTTCCCTTCCTGCCTCAAACAGCCTGGACCATGCGATCCTCCGCATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCAACATTTTACCTTTATCTTGCCCTTGCACCATCATTTACAGATAAGGGAAAATTCCTCTTAGCTGCTCGAAGATATAGGCATGGATCTCATACTGAGTATATAATATCTCTTGATGGTGAAGACCTATCCCAAGGAAGCAATGCTTATGTGGGGAAGTTAAGCTCCGATTTTCTTGGTACCAATTTTACAATTTATGATAGCCAGCCACCACATAACGGTGCAAAGCCATCGAGCAGTAAATCAAGCCGCCGCTTTGCAAGCAAGCAAATTAGCCCACAAGTTTCTGCAGGGAACTTTGAAGTTGGGCAAGTCTCTTACAAATTTAATCTTTTGAAATCAAGAGGCCCAAGGAGAATGATATGCTCTCTGAAGTGCCCTGTATCAGAAGACACTGGCACCAGCAAACCTTATGATGACTCGAAGATGAAGAAATCCGAGTCCTTTTCTCCTTCTTCTGGGTCAACAATCTTAAGAAACAAGGCCCCTAGATGGCATGAGCACCTGCAATGTTGGTGCTTGAATTTTCACGGTCGGGTGACGGTAGCATCCGTTAAAAACTTTCAACTTGTCGCTGCTGTTGACCATAGCCAGCCAGGAGGAGTTAAAGGGGACGAAGAAACAGTCCTCCTACAGTTCGGAAAGGTAGGTGACGACACCTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTCGGCACGAAGTTGGCATGCGAGTAG 1155 47.19 MSLRRSFLSRRFSSKSLYRVPNGVGDGILRVASSEVEDGSGQLSGGRMQPESAWSSMLPELLREIIQRVEASEDSWPNRQNVVSCACVCKRWRDITKEVARAAPLSGKITFPSCLKQPGPCDPPHQCLIKRNKKTSTFYLYLALAPSFTDKGKFLLAARRYRHGSHTEYIISLDGEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVSEDTGTSKPYDDSKMKKSESFSPSSGSTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAAVDHSQPGGVKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2925521 2930122 + CmaCh04G005750.1 Cma04g00575 291656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00575 384 Pfam F-box domain 54 98 IPR001810 GO:0005515
Cma04g00575 384 ProSitePatterns Tub family signature 2. 369 384 IPR018066 -
Cma04g00575 384 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 384 - -
Cma04g00575 384 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cma04g00575 384 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cma04g00575 384 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cma04g00575 384 PRINTS Tubby superfamily signature 293 310 IPR000007 -
Cma04g00575 384 PRINTS Tubby superfamily signature 311 327 IPR000007 -
Cma04g00575 384 PRINTS Tubby superfamily signature 341 360 IPR000007 -
Cma04g00575 384 PRINTS Tubby superfamily signature 362 384 IPR000007 -
Cma04g00575 384 PANTHER TUBBY-RELATED 1 384 - -
Cma04g00575 384 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Cma04g00575 384 Pfam Tub family 115 379 IPR000007 -
Cma04g00575 384 ProSitePatterns Tub family signature 1. 311 324 IPR018066 -
Cma04g00575 384 SUPERFAMILY Tubby C-terminal domain-like 104 384 IPR025659 -
Cma04g00575 384 Gene3D - 48 100 - -
Cma04g00575 384 MobiDBLite consensus disorder prediction 264 292 - -
Cma04g00575 384 MobiDBLite consensus disorder prediction 203 223 - -
Cma04g00575 384 Gene3D Tubby Protein; Chain A 110 384 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00575 Cma16g00440 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00575 Cma-Chr4:2925521 Cma08g01203 Cma-Chr8:7397977 6.67E-134 dispersed
Cma16g00440 Cma-Chr16:2194491 Cma04g00575 Cma-Chr4:2925521 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34779 PF01167 Tub 1.80E-101 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00575 K19600 - csv:101211968 630.943