Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00579 ATGACCGAGCCCAAGCCCGATTCCGATCACCTATCTCCGTTTTTCCCCAAATCGCACCGTTCCGGTGCCGACGACCGGAACCCACTTATGGATTTCGATCTCGATTTGGATATTCCTTGGCCGTTGGATCAAACCCCTTTGTTTTCAACCTCCGATCATCTTGCTTCGCCTCTTTGGGCCTTCTCTGAAGCCGATGATGGCGACGATTCCAAATTTGCTGCCTATGCTTGCTCTGTTCTTGGTACTTCCAATTTGAATTCGGTACCGCAAAAGCCGATCGAGAATCACAAGTTTAAGATTCTTCCCGTTCCGTCGGAGAATCCAGATGGGTATTGCTTGATCAAGGAAAAAATGGCGCAAGCTCTTCGGTACATTAAGGATTTGTCCGACCAGCAAGTTCTAGCTCAGGTTTGGGCACCTGTAAAGAATGGTGACAAGGTTGTACTTTCGACTTCCGGGCAACCGTTTGTTCTTGATACGCAGAGCAACGGACTTCATCGGTATAGGTTGGTCTCTTTGACGTATATGTTCTCTTTGGACACTGAATTGGATGGATCTCTTGGGCTCCCTGGTCGTGTTTTTCAACAAAAGTTGCCTGAATGGACTCCAAATGTGCAGTATTACTCGAGCAAGGAGTATTCACGACTTAGGCATGCTCTTGATTATAATGTTCAGGGAACTCTGGCTTTGCCTGTTTTCGACCCTTCGGGGCAGTCTTGTCTTGGTGTTCTTGAGCTAATCATGACTTCACCGAGGATCAATTATGCACCTGAGGTGGACAAAGTCTGTAAAGCTCTGCAGGCTGTTAATCTAAAAAGTTCAGAGATTTTGGATCGTCCAAATATCCAGATCTGCAACGAAGGCCGACAGAATGCGCTGGCTGAAATCTTGGCCGTACTCACCGTTGTATGTGAAACCCATAACTTACCATTGGCTCAAACCTGGGTTCCATGCAGGCACCGAAACGTGCTCGCCAATGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGTATGGGGCGGATCTGTATGTCTGCAACTGAAGTAGCATCCTATGTTGTTGATGCTCACAAGTGGGGTTTTCGCGAGGCGTGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCGGGGAGAGCGTTTTCATCTCACAGCTCGTGTTTTTGTGGAGACATCACCCAATTCTGCAAGAACGAATACCCTTTGGTACACTACGCACTCATGTTCGGATTAAAGAGCTGTTTTTCGATCTGCTTACGGAGCAAGTTTACTGGAGACGACGAGTACATTCTAGAATTCTTTCTGCCACCGAGCCTCGTTGATTATCAGGAACAAAAGACTTTGTTGGGTGCAATGATGGGAACAATGAAGCAGCATTTCTACACTCTCAAAGTTGCCTCTGGAATCAACCTCGAGGAGGGAGGAATCGTCGAAGTCGTTCAAGCATCAAGAAATGGAGGGTTTGAATCAAGACTTGAATGCATTCATATTCCACCCGAGTCTGATGCCATGCCGAACGCGGGGGAGGTAGTTGCCTTAGAAACATTACAACAACGTTCTTTAATGGTTCACGATGCTCCAAAGGACGAAAACAATACTGTTCGGGACAGGGAAAGCGACAACCCCGTTCCTTGTGTCCAGAATAAGGAAGTGAAAAAAACATCCAAAAGGAAGCGTGGAAAAGCCGAGAAGTCGATTAGTCTGGACGTTCTTCAACAATATTTTGCTGGTAGTCTTAAGGATGCTGCCAAAAGCCTTGGTGTTTGTCCGACGACAATGAAGCGTATCTGTAGGCAACATGGGATCTCACGGTGGCCATCTCGAAAGATCAATAAGGTGAACCGCTCTCTTTCAAAGCTAAAACGTGTCATCGATTCCGTTCAAGGGAATGAAGGAACTTTTGGAATGTCTTCTCTTGCTACAAGTCCACTTCCTGTTGCAGTTAGTTCGAGTTCTCATCCGTTAACTCCGGACGGGTCGAATCAAAATTTTTTTTTTGCTTCTCAACCCTCTGATCCTCAATGTAAAGAAACGAACACCTCAGAAGCACAGACAAACAACACACAGGCTAGATTGAAAGATCAATTACTCAGGGGAGTGTCGAACCCGGAAGAACTGTTTCACGAGCAGAATGGATCTCTAATGAAGCTCGGAAATGGCTTCAACAATTTTAGAACAGGAAGCGGATCTCGGGACGAGAGCACCGGGACGCCTACATCTCATGGTTCTTGCCAAGGCAGTCCTGCAAATGAGAGTAATCCCCTTTCTATTCACCACCATGAACAATGTGTAAGAAGAGGCTCTCCTGAAGCCGCAGCCTTCCATCCAATCGACAAACCGAACAAATCGACACGTGCTTGTCCAGTTTCCGATACGCTTCTGATGGTTGAGCCAAAGGAACCATTTGGAGGAATGCTGATTAAGGATGCAGGAAGCTCTAAGGACTTAAAGAATCTTTGCGCTTCGGTTGCCGATGCCATTCTCGACGATCAAGTACCTAAATTTTGTTGGCCCAGACCTTCTGATATAGCTATGAGACAACCTATGGAGTCTGTTTGTCACACAGTCCCTCATATATCAGCAAGGCAAGAACCAAGTAGAATGACTATCAAGGCCACTTATAAGGACGATATCATTCGGTTTCAAATTTCCACGTGCACCGGTATTGTGGAGTTACGAGAGGAAGTAGCGAAGAGATTGAAACTAGACGTCGGTACATTCGATATCAAATACATGGACGACGATCGTGAATGGGTTCTTACTGCTTGCGACGCAGACTTACAAGAGTGTGTAGATATCTCAAAAGCATCAGGTAGCAACATAATAAGATTGTTGGTTCATGATTTATCTGTCAATCTTGGGAGTTCTTGTGAGAGTACTAGAAAGGTTTCATTTTCCTCTTCAGCTAATGTGAGATTTCATAATCCACCTCCTTGGAGCCAACGTCCTTGCTGGCACACCCTTGTTCATAAAAGAGAAACAGAAGGGCTTACTCCAATTAAAGAAATAAAGAAAGAAATAAAGAAAAAACTAAATCAACTCTATACATGA 3060 45.26 MTEPKPDSDHLSPFFPKSHRSGADDRNPLMDFDLDLDIPWPLDQTPLFSTSDHLASPLWAFSEADDGDDSKFAAYACSVLGTSNLNSVPQKPIENHKFKILPVPSENPDGYCLIKEKMAQALRYIKDLSDQQVLAQVWAPVKNGDKVVLSTSGQPFVLDTQSNGLHRYRLVSLTYMFSLDTELDGSLGLPGRVFQQKLPEWTPNVQYYSSKEYSRLRHALDYNVQGTLALPVFDPSGQSCLGVLELIMTSPRINYAPEVDKVCKALQAVNLKSSEILDRPNIQICNEGRQNALAEILAVLTVVCETHNLPLAQTWVPCRHRNVLANGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHKWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFCKNEYPLVHYALMFGLKSCFSICLRSKFTGDDEYILEFFLPPSLVDYQEQKTLLGAMMGTMKQHFYTLKVASGINLEEGGIVEVVQASRNGGFESRLECIHIPPESDAMPNAGEVVALETLQQRSLMVHDAPKDENNTVRDRESDNPVPCVQNKEVKKTSKRKRGKAEKSISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIDSVQGNEGTFGMSSLATSPLPVAVSSSSHPLTPDGSNQNFFFASQPSDPQCKETNTSEAQTNNTQARLKDQLLRGVSNPEELFHEQNGSLMKLGNGFNNFRTGSGSRDESTGTPTSHGSCQGSPANESNPLSIHHHEQCVRRGSPEAAAFHPIDKPNKSTRACPVSDTLLMVEPKEPFGGMLIKDAGSSKDLKNLCASVADAILDDQVPKFCWPRPSDIAMRQPMESVCHTVPHISARQEPSRMTIKATYKDDIIRFQISTCTGIVELREEVAKRLKLDVGTFDIKYMDDDREWVLTACDADLQECVDISKASGSNIIRLLVHDLSVNLGSSCESTRKVSFSSSANVRFHNPPPWSQRPCWHTLVHKRETEGLTPIKEIKKEIKKKLNQLYT 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2943747 2949216 + CmaCh04G005790.1 Cma04g00579 291660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00579 1019 MobiDBLite consensus disorder prediction 724 760 - -
Cma04g00579 1019 PANTHER PROTEIN NLP8 43 965 IPR045012 GO:0003700
Cma04g00579 1019 SUPERFAMILY CAD & PB1 domains 863 953 - -
Cma04g00579 1019 Pfam RWP-RK domain 569 616 IPR003035 -
Cma04g00579 1019 Pfam PB1 domain 871 951 IPR000270 GO:0005515
Cma04g00579 1019 MobiDBLite consensus disorder prediction 724 772 - -
Cma04g00579 1019 Gene3D - 868 953 - -
Cma04g00579 1019 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 43 965 - -
Cma04g00579 1019 MobiDBLite consensus disorder prediction 671 693 - -
Cma04g00579 1019 SMART PB1_new 870 952 IPR000270 GO:0005515
Cma04g00579 1019 MobiDBLite consensus disorder prediction 1 26 - -
Cma04g00579 1019 ProSiteProfiles PB1 domain profile. 870 952 IPR000270 GO:0005515
Cma04g00579 1019 CDD PB1_NLP 871 951 IPR034891 -
Cma04g00579 1019 ProSiteProfiles RWP-RK domain profile. 555 636 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00579 - - - csv:101212500 1620.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00579 Cma-Chr4:2943747 Cma09g00053 Cma-Chr9:238376 5.98E-11 dispersed
Cma16g00528 Cma-Chr16:2695380 Cma04g00579 Cma-Chr4:2943747 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma16g00528 CST 186 994 NLP Transcription Factor Family AT1G64530 50.4 1.6e-213 740.0
Cma04g00579 . 169 965 NLP Transcription Factor Family AT1G64530 51.4 2.4e-209 726.1
Cma16g00528 CST 265 994 NLP Transcription Factor Family AT4G24020 55.1 3.3e-203 705.7
Cma04g00579 . 248 966 NLP Transcription Factor Family AT4G24020 53.4 2.8e-194 676.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34780 PF00564 PB1 9.70E-17 CL0072 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00579 Cma_Chr04 FPKM 27.978479 32.932499 16.852217 17.728565 19.067209 17.880125 19.459187 11.39222 9.083471 10.262379