Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00586 ATGGGCGTCTGTCTGGTCAAATTTTCTGGCTTGTTGGTTCTTCACATTCTACTTCTTTGTCTGGCAATCAATAAAAGCACTGGCCTCACCTCTGATGGTGAGGCACTTCTAAGCTTTAGGATGGCAGTTTCCAGTTCTGATGGTGTCATCTTTCAGTGGAGACCAGAGGATCCAAATCCCTGTAACTGGACTGGAGTGGTCTGTGATTCAAAAACGAAGCGAGTTATCTCATTGAAGCTTGGAAGTCACAAGCTGAGTGGGTTCATTGCACGTGAACTTGGGAAGCTAGACCAATTAAAGACCCTAATTCTTTCGGACAACAACCTATATGGAACAATACCATCAGAACTGGGAAATTGCTCGCAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGTGGAGTGATTCCCTTTGAGCTGGGAAACCTTTCTGAGTTGGAAATGCTAGATGTTTCAAGCAACTCACTTAGTGGAAATATTCCAACATCCCTCGGGAATTTGGATAAGCTCGCTATTCTCAATGTGTCGTCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGTCTTCCTTTGTTGGAAATCGTGGTTTATGTGGCAAACAAGTTAGTGTCACTTGCAAAGACAACAACACTGGATCTGGAACAAATTCTGAATCCCCAGGCTCAGGCCAAAATCAAATGAGGAAGAAGTACTCTGGTCGGCTACTCATAAGTGCATCAGCTACAGTGGGGGCACTACTACTTGTTGCTCTTATGTGTTTCTGGGGCTCCTTTCTTTTTAAAAGATTTGGAAGAAATGAAAAGAAGGGTCTTGCAAAGAATGTCGGTGGAGGCGCATCAGTTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATTATGAAGAAGTTGGAAACCTTGAATGAGGAACACATCATCGGTTCTGGGGGTTTTGGAACAGTTTACAGGCTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGCTTAAAGCATCGATACCTTGTTAATTTGAGAGGATATTGCAATTCTCCCACGTCGAAATTGTTGATTTATGATTACCTATCTGGGGGCAGCCTTGACGAGGCCCTTCATGAAAGATCTGAGCCATTAGATTGGGACACACGCTTGAATATTATATTGGGAGCAGCGAAAGGGCTTGCCTATCTGCACCATGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCGAGCAACATTTTACTTGATGGAAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCTAAGCTTCTGGATGATGATAAATCTCACATTACAACCATTGTTGCCGGAACATTTGGTTATTTGGCCCCTGAATATATGCAAAGTGGTAGAGCAACTGAAAAGACCGATGTATATAGTTTTGGAGTCCTAGTACTTGAAGTACTGAGTGGAAAGCGACCGACAGATGCATCATTTATTGAGAAAGGCCTGAACATTGTTGGCTGGCTAAATTTTCTTCTCACGGAGAATAGGCAACGAGAAATAGTTGATTCACAATGTGAAGGAGTGCAGACAGAAACTCTTGACGCATTGCTCAGGCTTGCTATTCAGTGTGTTTCTTCTAGTCCAGATGATCGGCCGACCATGCACCGAGTCGTCCAGTTCTTTGAGTCTGAGGTTATGACGCCATGCCCAAGTGACTTCGATGATTCCAATTCTGATTAA 1788 42.51 MGVCLVKFSGLLVLHILLLCLAINKSTGLTSDGEALLSFRMAVSSSDGVIFQWRPEDPNPCNWTGVVCDSKTKRVISLKLGSHKLSGFIARELGKLDQLKTLILSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGVIPFELGNLSELEMLDVSSNSLSGNIPTSLGNLDKLAILNVSSNFLIGPVPSDGVLSKFSESSFVGNRGLCGKQVSVTCKDNNTGSGTNSESPGSGQNQMRKKYSGRLLISASATVGALLLVALMCFWGSFLFKRFGRNEKKGLAKNVGGGASVVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEPLDWDTRLNIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLLTENRQREIVDSQCEGVQTETLDALLRLAIQCVSSSPDDRPTMHRVVQFFESEVMTPCPSDFDDSNSD 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2970838 2977196 - CmaCh04G005860.1 Cma04g00586 291667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00586 595 Gene3D Transferase(Phosphotransferase) domain 1 386 584 - -
Cma04g00586 595 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Cma04g00586 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Cma04g00586 595 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 3 595 IPR031071 GO:0004672|GO:0005524|GO:0030244
Cma04g00586 595 Pfam Protein kinase domain 312 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00586 595 SUPERFAMILY Protein kinase-like (PK-like) 292 577 IPR011009 -
Cma04g00586 595 SUPERFAMILY L domain-like 29 189 - -
Cma04g00586 595 Gene3D Ribonuclease Inhibitor 29 216 IPR032675 -
Cma04g00586 595 ProSiteProfiles Protein kinase domain profile. 310 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00586 595 Gene3D Phosphorylase Kinase; domain 1 282 385 - -
Cma04g00586 595 PANTHER RECEPTOR-LIKE PROTEIN 55 3 595 - -
Cma04g00586 595 SMART serkin_6 310 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00586 595 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00586 Cma-Chr4:2970838 Cma09g00750 Cma-Chr9:3591082 0 dispersed
Cma09g00683 Cma-Chr9:3227437 Cma04g00586 Cma-Chr4:2970838 1.89E-102 dispersed
Cma16g00239 Cma-Chr16:1094147 Cma04g00586 Cma-Chr4:2970838 1.82E-26 dispersed
Cma04g00586 Cma-Chr4:2970838 Cma01g01343 Cma-Chr1:9597494 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68470 PF00069 Pkinase 3.50E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00586 - - csv:101205992 1124.0