Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00595 ATGAGTTGTCGAACCAACAAACAGAACTCGAACCCATTTCATTCCGCCATTGCTGACTTTTCCTGTTCCAGGAAGAAGATGGGCAGTGAAAATTTTGGTTTATGGCTATTTTTTATTGCATCACTTCAGTTTTTTATTAGAACACACTGTACTATTGTGGGGATTACTTATGTTCATGAACCTAGTGTCAAAGGAGCTGTTTGTTTGGATGGTAGCCCTCCAGCTTATCACTTGAGTGAAGGGTTAGGCGCTGGTATTAACAATTGGTTGATTCAGCTAGAGGGAGGAGGATGGTGCAACAATGTCACGACTTGCGTCCTGCGTCGGGATACTCGTTTAGGTTCGTCTAAGGCCATGGCTACCGAGCTTGCGTTTTCGGGGCTTTTGAGTAACCAACGAGAATTCAATCCAGATTTTTATAACTGGAATAGAATCAAAATTCGATACTGCGATGGATCTTCATTCACTGGAGACGTCGAAGCCGTTGATCCCGCAACCAATCTGCATTTCAGAGGAGCAAGAATTTTTCGAGCCGTGATCGATGAACTACTCGCCAAGGGAATGAAGAACGCGAAGAACGCTATTCTCTCGGGATGTTCGGCCGGTGGATTAGGTTCCATTTTGCATTGTGATATCTTCAAATCTTTACTTCCTCCTACTACCAAAGTAAAGTGTGTCTCAGATGCAGGATACTTCGTCAATGTGAAAGATGTCTCTGGAGCACGGCATATCGAGGAGTTCTTTAGTGATATAGTCGCCACTCATGGTTCAGCTAGGAATTTGCCTGTACAATGCACTTCAAAAATGAAACCCGAGTTGTGTTTCTTTCCCCAAAATGTGATTCAGCTCGTTCGGACTCCAATCTTTATTGTAAATGCAGCTTATGATTCATGGCAGGTAAGGAACATTCTGGTGCCCGGTGTTGCCGATCCACGCCATATTTGGAATGACTGCAAGAACGACATCAAAAACTGCTCGTCTATTCAGCTTGAAACCTTACAAGATTTCAGGGATAAGTTTTTGAATGCATTGAATGGCTTTGGACACCCTTCATCAAGAGGATTGTTCATAGATTCTTGCTATGCGCATTGCCAAACTGAAATGCAGGAGACATGGCTAAGAGCAGACTCCCCCAAGATCAGTAACACGCCCATTTCAAAGTCGATTGGAGACTGGTTTTTCGACAGGAGTGTGTTCCAGAAGATCGATTGTCCATACCCGTATTACGTTGTTGTTTATAACAGAGAAAAAAAAAACACAAGTATACAGTTTGAATACAATGAAGCAACATTCATCAAGAGCTCGAAAATAAGAACAAAGGCCATCGCTGCACCGAACTCGGGGTGTGTCGTTATCGTCTTCGATTGTTTGAATTGTGTATTAGCTTAG 1389 42.98 MSCRTNKQNSNPFHSAIADFSCSRKKMGSENFGLWLFFIASLQFFIRTHCTIVGITYVHEPSVKGAVCLDGSPPAYHLSEGLGAGINNWLIQLEGGGWCNNVTTCVLRRDTRLGSSKAMATELAFSGLLSNQREFNPDFYNWNRIKIRYCDGSSFTGDVEAVDPATNLHFRGARIFRAVIDELLAKGMKNAKNAILSGCSAGGLGSILHCDIFKSLLPPTTKVKCVSDAGYFVNVKDVSGARHIEEFFSDIVATHGSARNLPVQCTSKMKPELCFFPQNVIQLVRTPIFIVNAAYDSWQVRNILVPGVADPRHIWNDCKNDIKNCSSIQLETLQDFRDKFLNALNGFGHPSSRGLFIDSCYAHCQTEMQETWLRADSPKISNTPISKSIGDWFFDRSVFQKIDCPYPYYVVVYNREKKNTSIQFEYNEATFIKSSKIRTKAIAAPNSGCVVIVFDCLNCVLA 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2999765 3002909 + CmaCh04G005950.1 Cma04g00595 291676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00595 462 Pfam Pectinacetylesterase 51 398 IPR004963 GO:0016787
Cma04g00595 462 PANTHER PECTIN ACETYLESTERASE 34 408 - -
Cma04g00595 462 PANTHER NOTUM-RELATED 34 408 IPR004963 GO:0016787
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00595 Cma-Chr4:2999765 Cma11g01184 Cma-Chr11:6960985 2.56E-148 dispersed
Cma16g00513 Cma-Chr16:2635616 Cma04g00595 Cma-Chr4:2999765 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00595 K19882 - csv:101214431 671.389