Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00601 ATGTTCTTCCCTTTCATCCTCGCCGCCGCCGCCGCCGCCATCTTCTTCTTCTTCCATTCTCTTTTCAAATTCTCCGCCCCTGTTCGCCGGAAACCTCCTCTTCCACCGGGCTCAATGGGCTGGCCTTACATCGGTGAAACCCTCCAACTCTACTCTCAAGATCCCAACGTCTTCTTTGCCTCCAAGAAGAAGAGATATGGTCCAATTTTCAAGTCCCACATATTGGGATATCCTTGTGTGATGCTTTCAAGCCCCGAAGCTGTGAAATTTGTGTTGGTTACTAAAGCCCATCTCTTTAAGCCGACATTCCCAGCTAGTAAAGAAAGAATGTTGGGAAAAAATGGCATCTTTTTTCACCAAGGTGAGTATCATGCCAAATTGAGGCGCCTCGTCCTCCGAACATTCATGCCTGAGTCCATCAAAAACATCGTACCCACCATCGAATCCATCGCTAAGAACACCCTACAATCATGGAATGGACACTTGATCAACACCTTCCAAGAAATGAAAATGTTCGCATTCGAGGTTTCGTTGCTATCAATATTTGGAAAAGATGAATCTCTTTACTTCGAAGATCTTAAACGATGCTATTACATTCTTGAAAAAGGGTACAATTCGATGCCCATAAACTTGCCAAGAACACTCTTCCACGAGGCCATGAAAGCTAGGAAGGATCTAGCGCGTATCTTAAACAAGATCCTCACTACCAGGAGGGAAACGAAGCGGGATTACAAAGACCTCCTCGGATCATTCATGAGCGAAAAGGAAGGCCTCACCGATGAACAGATAGCCGACAATGTCATTGGCATCATCTTCGCAGCTCGCGACACGACAGCAAGTGTTCTAACATGGATCTTGAAGTTCCTAGGAGAAAACCCAAGTGTTCTTCAAGCTGTTACCGATGAACAAGAAGCAATAATGAATGAAAAACAGAGTAGAGAAGATAATCTCACCTGGGGTGACACTAAAAACATGCCGATGACTTCAAGGGTGATTCAAGAAACTCTAAGAGTTGCTTCGGTTTTGTCATTTACTTTCAGAGAAGCAGTGGAAGATGTTGAATTTGACGGGTATTTGATTCCAAAGGGATGGAAAGTTTTGCCTCTGTTCAGGAACATTCATCATAGCTCTCAGAATTTTACTCAGCCTGACAAGTTCGATCCTTGGAGATTTGAGGTGGCTCCAAAACCCAATACGTATATGCCATTTGGCAATGGGACCCACTCCTGTCCGGGTAATGAATTGGCCAAGCTGGAGATGTTGGTTTTACTCCATCATTTAACCACAAACTACAGGTGGAATGTAGTGGGAGCTGAAGAAGGGATTCAATATGAATTGCCGCCGCAAGGCTATTAA 1356 44.54 MFFPFILAAAAAAIFFFFHSLFKFSAPVRRKPPLPPGSMGWPYIGETLQLYSQDPNVFFASKKKRYGPIFKSHILGYPCVMLSSPEAVKFVLVTKAHLFKPTFPASKERMLGKNGIFFHQGEYHAKLRRLVLRTFMPESIKNIVPTIESIAKNTLQSWNGHLINTFQEMKMFAFEVSLLSIFGKDESLYFEDLKRCYYILEKGYNSMPINLPRTLFHEAMKARKDLARILNKILTTRRETKRDYKDLLGSFMSEKEGLTDEQIADNVIGIIFAARDTTASVLTWILKFLGENPSVLQAVTDEQEAIMNEKQSREDNLTWGDTKNMPMTSRVIQETLRVASVLSFTFREAVEDVEFDGYLIPKGWKVLPLFRNIHHSSQNFTQPDKFDPWRFEVAPKPNTYMPFGNGTHSCPGNELAKLEMLVLLHHLTTNYRWNVVGAEEGIQYELPPQGY 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3033551 3036260 - CmaCh04G006010.1 Cma04g00601 291682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00601 451 PRINTS P450 superfamily signature 410 421 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 PRINTS P450 superfamily signature 401 410 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 PRINTS P450 superfamily signature 330 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 PRINTS P450 superfamily signature 273 290 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 SUPERFAMILY Cytochrome P450 29 439 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 PANTHER CYTOCHROME P450 26 15 446 - -
Cma04g00601 451 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 PRINTS E-class P450 group I signature 282 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 PRINTS E-class P450 group I signature 329 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 PRINTS E-class P450 group I signature 262 279 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 PRINTS E-class P450 group I signature 410 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 PRINTS E-class P450 group I signature 369 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 PRINTS E-class P450 group I signature 400 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 PANTHER ABSCISIC ACID 8'-HYDROXYLASE CYP707A2 15 446 - -
Cma04g00601 451 Pfam Cytochrome P450 35 436 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 Gene3D Cytochrome P450 25 449 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00601 451 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 403 412 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00618 Cma-Chr1:3222113 Cma04g00601 Cma-Chr4:3033551 0 dispersed
Cma04g00601 Cma-Chr4:3033551 Cma11g01752 Cma-Chr11:11648636 2.65E-175 dispersed
Cma16g00505 Cma-Chr16:2597830 Cma04g00601 Cma-Chr4:3033551 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00601 K09843 - csv:101212508 783.097