Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00608 ATGGTAATGGCGGCCAGTTCCCTATCGAATCTGCCTTCCGCTGTCTTCAATGGAAACCTTCAGAAAAATGAATTTGGGTTTGTGGGTATGCCGCGACGACCCGCCAAGTATCTCAAATCCAATCGTAGAGGTCGTGTTCTTAGATGCCAATCAACTCAAGTTGATGAACCTAAAACTAAGAGAAATTTACTTGACAATGCAAGCAATCTTCTAACTAATTTGTTAAACGGTGGAAATCTTGGATCTATGCCGATAGCTGAAGGTGCAGTCTCTGATTTGTTTGGTCGCCCACTCTTTTTTGCACTATATGATTGGTTCTTAGAGCATGGATCTGTTTATAAACTTGCCTTTGGACCAAAAGCCTTTGTTGTTGTATCGGATCCTATTGTGGCAAGATATATTCTTCGAGAAAATGCATTTAGTTATGATAAGGGAGTGCTTGCTGATATTCTCGAACCCATAATGGGTAAAGGACTAATACCAGCTGACTTAGACACTTGGAAGCAAAGGAGACGAGTTATAGCTCCTGGATTCCACGCGTTATACTTGGAAGCTATGGCCAAAGTGTTTGCTGATTGTTCAGAACGATCGATACGGAAATTGGAGAAGCTTTTAGGAGAAGGTGAAGTTCATGAGGATAAAACCATTGAGTTGGATATGGAAGCAGAGTTTTCAAATTTGGCTCTTGATATCATTGGACTTGGTGTTTTCAACTATGATTTTGGTTCTGTAACCAAAGAATCCCCAGTGATTAAGGCTGTATATGGAACCCTTTTTGAAGCAGAGCATAGATCAACTTTCTATATCCCATATTGGAAAGTACCTTTGGCAAGGTGGATAGTCCCGAGGCAACGTAAATTCAATAGTGACCTTAAGGTTATTAACGACTGTCTCGATGGCCTAATACGAAACGCAAGAGAAACCCGAGAGGAAGCAGATGTCGAGAAATTGCAGCAAAGGGACTATTTAAATCTTAAGGATGCCAGTCTTTTGCGTTTCTTAGTTGATATGCGGGGAGCTGATGTCGATGATCGGCAGCTTAGGGATGATCTGATGACGATGCTTATTGCTGGCCATGAAACAACTGCTGCTGTGCTTACATGGGCTGTTTTTTTGCTTGCACAAAACCCTTCAAAAATGAAAAAAGCTCAAGAAGAGGTTGATTTGGTTCTTGGCAAGGGAAGGCCAAATTTTGAATTACTCAAAGAATTGAAGTACATCAGACTTATCATCGCGGAGACTCTTCGTTTGTTTCCTCAACCACCATTGCTAATAAGACGAGCTCTCAAACCAGATACGTTACCAGGAGGATATAATGGTGACAAAAATGGATATCCAATTCCTGCAGGGACTGACATCTTCATCTCTGTTTACAATCTCCATAGATCCCCATACTTCTGGGATAACCCTCAAGATTTCGAACCAGAGAGATTTCAGGTAAACAAAGCGAGCGATGGGATTGAAGGATGGGATGGTTTCGATCCTTCTAGAAGCCCGGGAGCTCTATACCCAAATGAGATTATATCAGACTTTTCCTTCTTGCCATTTGGAGGAGGACCTAGAAAATGTGTGGGAGATCAATTTGCTTTAATGGAGTCAACTATAGCACTGGCCATGTTGCTGCAGAAGTTTGATGTGCAACTAAAAGGAAGTCCAGAATCTGTGGAACTAGTCACCGGGGCTACCATACATACCAAAAGTGGGTTGTGGTGCAAACTGAGAAGAAGATCACAAGTAAATTGA 1743 41.82 MVMAASSLSNLPSAVFNGNLQKNEFGFVGMPRRPAKYLKSNRRGRVLRCQSTQVDEPKTKRNLLDNASNLLTNLLNGGNLGSMPIAEGAVSDLFGRPLFFALYDWFLEHGSVYKLAFGPKAFVVVSDPIVARYILRENAFSYDKGVLADILEPIMGKGLIPADLDTWKQRRRVIAPGFHALYLEAMAKVFADCSERSIRKLEKLLGEGEVHEDKTIELDMEAEFSNLALDIIGLGVFNYDFGSVTKESPVIKAVYGTLFEAEHRSTFYIPYWKVPLARWIVPRQRKFNSDLKVINDCLDGLIRNARETREEADVEKLQQRDYLNLKDASLLRFLVDMRGADVDDRQLRDDLMTMLIAGHETTAAVLTWAVFLLAQNPSKMKKAQEEVDLVLGKGRPNFELLKELKYIRLIIAETLRLFPQPPLLIRRALKPDTLPGGYNGDKNGYPIPAGTDIFISVYNLHRSPYFWDNPQDFEPERFQVNKASDGIEGWDGFDPSRSPGALYPNEIISDFSFLPFGGGPRKCVGDQFALMESTIALAMLLQKFDVQLKGSPESVELVTGATIHTKSGLWCKLRRRSQVN 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3093283 3100027 + CmaCh04G006080.1 Cma04g00608 291689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00608 580 PRINTS P450 superfamily signature 357 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00608 580 PRINTS P450 superfamily signature 409 420 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00608 580 PRINTS P450 superfamily signature 514 523 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00608 580 PRINTS P450 superfamily signature 523 534 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00608 580 Pfam Cytochrome P450 106 566 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00608 580 Gene3D Cytochrome P450 82 580 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00608 580 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 516 525 IPR017972 GO:0005506|GO:0016705
Cma04g00608 580 PRINTS E-class P450 group I signature 106 125 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00608 580 PRINTS E-class P450 group I signature 346 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00608 580 PRINTS E-class P450 group I signature 366 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00608 580 PRINTS E-class P450 group I signature 513 523 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00608 580 PRINTS E-class P450 group I signature 523 546 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g00608 580 PANTHER CYTOCHROME P450 97B3, CHLOROPLASTIC 78 576 - -
Cma04g00608 580 PANTHER CYTOCHROME P450 FAMILY 4 78 576 - -
Cma04g00608 580 SUPERFAMILY Cytochrome P450 94 576 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00608 Cma-Chr4:3093283 Cma16g00734 Cma-Chr16:3867166 8.97E-149 dispersed
Cma04g01305 Cma-Chr4:6636084 Cma04g00608 Cma-Chr4:3093283 1.67E-16 dispersed
Cma18g00828 Cma-Chr18:7231578 Cma04g00608 Cma-Chr4:3093283 4.47E-18 dispersed
Cma04g00608 Cma-Chr4:3093283 Cma07g00885 Cma-Chr7:4177829 1.64E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00608 K24543 - csv:101210292 1055.05