Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00614 ATGCTTCGCAGTTTAATCCCTCATTCCCCCATCAATTCCGCTTCCAATTCCATGTCGTCCAAGCGCCCCGCCGACGCCGACTCCTCCGCCGACGACCCTTCCTCCAAGCGTCTCAATTCCGGTCCCTCCAACTTCCATGCCGGCGCCTCCGGGGAGAAGGACGTCGAGGAGGAAGAAGAGCTTCCGCTTGTCGATGGCAGCGACTCCACTGGTTTGAGACTGCTAGGTCTTCTTCTTCAATGTGCTGAGTGCGTCGCCATGGATAATCTACAAGAGGCGAACGATCTCTTGCCGGAGATCTCGGAGCTCTCCTCGCCGTTCGGTACCTCACCTGAGCGCGTCGGCGCGTACTTCGCCCACGCGCTTCAGGCTAGAGTGATAAGCTCCTGCTTGGGAACCTACTCGCCCTTGTCGATTAGAACGCTGAATCAAACTCAGTCGCAGAGGATGTTTAATGCTCTGCAATCCTACAATTCGATCAGTCCCTTAATCAAGTTCTCTCACTTCACCGCTAATCAAGCCATTTTCCAAGCCTTGGACGGCGAAGATCGAGTCCACGTTATCGATCTCGACGTAATGCAAGGTCTTCAATGGCCTGGATTGTTCCACATCCTCGCCTCCCGCTCGAAGAAAATCCAATCCCTACGAATCTCCGGCTTCGGATCCTCTTCGGAATTGCTCCAATCCACCGGGCAGAGACTCGCCGATTTCGCAACCTCCCTCGGCCTCCCGTTCGAGTTCCATCCAGTGGAAGGCAAAATCGGAAACCTAACGGACCCAAAGCAACTGGAATTGAGGGCAGGCGAGGCGGTGGTAGTGCACTGGATGCACCATTGCTTGTACGACATAACCGGCAGCGATATAGGTACGCTGAGACTTCTTTCAACCCTAAAACCTAAACTGATCACCATTGTGGAACAGGATCTGAGCCATGGGGGCAGTTTTCTAGGAAGATTCGTAGAAGCTCTGCATTATTACAGCGCGTTATTCGACGCGCTGGGTGATAGTTTGGCGATGGATAGCGTGGAAAGGCATGTGGTGGAGCAGCAATTGTTGGGATGTGAGATTAGGAACATTATCGCCGTCGGTGGACCCAAAAGAACTGGAGAAGTGAAGGTGGAGAGATGGGGGGATGAGCTGAAACGGGTCGGGTTCGGAGCCGTCTCTCTTGGGGGAAACCCAGCTGCTCAGGCCAGTCTGCTTCTGGGCATGTTTCCCTGGAAAGGGTATACTCTGGTTGAAGAAAATGGGTGCCTGAAACTCGGATGGAAGGACCTTTCCCTGCTCACAGCCTCTGCCTGGCAGCCCTGTGATTGA 1317 54.06 MLRSLIPHSPINSASNSMSSKRPADADSSADDPSSKRLNSGPSNFHAGASGEKDVEEEEELPLVDGSDSTGLRLLGLLLQCAECVAMDNLQEANDLLPEISELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLSIRTLNQTQSQRMFNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRSKKIQSLRISGFGSSSELLQSTGQRLADFATSLGLPFEFHPVEGKIGNLTDPKQLELRAGEAVVVHWMHHCLYDITGSDIGTLRLLSTLKPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDSLAMDSVERHVVEQQLLGCEIRNIIAVGGPKRTGEVKVERWGDELKRVGFGAVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPCD 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3147711 3149027 - CmaCh04G006140.1 Cma04g00614 291695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00614 438 Pfam GRAS domain family 76 435 IPR005202 -
Cma04g00614 438 MobiDBLite consensus disorder prediction 8 24 - -
Cma04g00614 438 ProSiteProfiles GRAS family profile. 65 435 IPR005202 -
Cma04g00614 438 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 435 IPR005202 -
Cma04g00614 438 PANTHER SCARECROW-LIKE PROTEIN 23 43 435 - -
Cma04g00614 438 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00259 Cma-Chr3:3640570 Cma04g00614 Cma-Chr4:3147711 9.88E-161 dispersed
Cma04g00614 Cma-Chr4:3147711 Cma08g00261 Cma-Chr8:1498467 1.72E-109 dispersed
Cma04g00614 Cma-Chr4:3147711 Cma07g01178 Cma-Chr7:6470874 5.91E-161 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34785 PF03514 GRAS 6.90E-116 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00614 - - bhj:120092974 745.347