Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00620 ATGGCGTCAACTAACAGCTGCTCTGATTTCTCCCTCTTGCAAAAGGTAGGGGCGGAGTTCATTGGAACATACATAATGCTATTCTCCGCAGCGGCGGCACCCATTCTGAACGAGAAATATCAGGCGGCGGAGAACGGCCTGATGACGAGTGCGATATGCGCAGGACTCGCGGTGATGGCCGTAATCCTCTCAATCGGTCACATCTCCGGCGCTCACTTGAATCCCTCCGTCACTGTAGCCTTCGCCGCTCTCCGTCACTTTCCATGGCTTCACGTCCCGCTCTATATCATCGCTCAGATTTCCGGATCTATTTCCGCCGCTTTCAGCCTCAAGATCGTCTTCCGTCCGTTCATGTCCGGCGGCGCCACCGTGCCCTCCGTCGGCACCGGTCAGGCCCTCGTGATCGAGTTCATCGTCACATTCTTCCTCATGTTCGTCATTGTTGCTGTCGCCACTGATACCAGAGCGGTCGGGGAATTGGCCGGAATTGCAATCGGAGGCATGGTAATGCTCAACATTCTCGTCGCCGGGCGCGCAACCGGCGGTTCGATGAACCCGGCGAGGACCTTAGGCCCAGCCATCGCTACAGAAAATTTCAAAGGTCTATGGATATACATAGTAGCACCCACAGCCGGAGCAGTGGCTGGGGCAGCCGGCTACACAGCCGTGAAGCTCCGGCAAGACACGGCAGCGGAATCAGCGCGGCAAGATGAAGGAAGCCTCAGCCGACGGGGAGAAAGCTCGCAAGCGGTGGTCCCGTCGAGATCCAGTGGAAACTCGGCATGGAAGCTGGACGGCGGTTCGTGGCTGTGTTTAGGCGGAGAGTGCAGGAAGGAGTGCTCGGAATTGGAGCATTTGAATGTGATTCTGTGTTACAAGGAAGCTAATCAGATCGCAGAATTTCTGAGTAAGAACGAAGCAGACGACGAGGGTTTGGTATAA 942 56.05 MASTNSCSDFSLLQKVGAEFIGTYIMLFSAAAAPILNEKYQAAENGLMTSAICAGLAVMAVILSIGHISGAHLNPSVTVAFAALRHFPWLHVPLYIIAQISGSISAAFSLKIVFRPFMSGGATVPSVGTGQALVIEFIVTFFLMFVIVAVATDTRAVGELAGIAIGGMVMLNILVAGRATGGSMNPARTLGPAIATENFKGLWIYIVAPTAGAVAGAAGYTAVKLRQDTAAESARQDEGSLSRRGESSQAVVPSRSSGNSAWKLDGGSWLCLGGECRKECSELEHLNVILCYKEANQIAEFLSKNEADDEGLV 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3171483 3173384 - CmaCh04G006200.1 Cma04g00620 291701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00620 313 Gene3D Glycerol uptake facilitator protein. 2 238 IPR023271 -
Cma04g00620 313 MobiDBLite consensus disorder prediction 243 259 - -
Cma04g00620 313 PANTHER AQUAPORIN NIP5-1 ISOFORM X1-RELATED 8 232 - -
Cma04g00620 313 ProSitePatterns MIP family signature. 72 80 IPR022357 -
Cma04g00620 313 PANTHER AQUAPORIN NIP2-1 8 232 IPR034294 -
Cma04g00620 313 MobiDBLite consensus disorder prediction 234 259 - -
Cma04g00620 313 SUPERFAMILY Aquaporin-like 10 227 IPR023271 -
Cma04g00620 313 Pfam Major intrinsic protein 9 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00620 313 PRINTS Major intrinsic protein family signature 14 33 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00620 313 PRINTS Major intrinsic protein family signature 54 78 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00620 313 PRINTS Major intrinsic protein family signature 91 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00620 313 PRINTS Major intrinsic protein family signature 135 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00620 313 PRINTS Major intrinsic protein family signature 166 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00620 313 PRINTS Major intrinsic protein family signature 203 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00620 Cma-Chr4:3171483 Cma15g01348 Cma-Chr15:8469875 1.09E-96 dispersed
Cma04g00620 Cma-Chr4:3171483 Cma02g00971 Cma-Chr2:5803306 2.61E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00620 K09874 - sind:105165797 305.064