Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00629 ATGACTTGCTTCCCTTTTTTGTTCGGTAAGAGGGCGAAATCCCCAACGGGAAGCGTTGGCAACGACGAAGAACTTTTAGGCATGCACAATGTTAGACTATATACATACAAAGAGCTAAAAGTTGCAACTGAAGATTTCAGCTTGGCGAATAAAATAGGGGAGGGCGGTTTCGGTTCTGTATACAAGGGAAGGCTAAGAAATGGAAAGCTTGCTGCCATAAAAGTTCTTTCGGCTCAATCGAGACAAGGATTGAAGGAATTCTTGGCTGAAACTAAAGTCATCTCTGTGATAGAACATGAAAATCTGGTTCAGCTTTATGGCTGCTGTGTGGAGAATAATCATAGAATTCTTGTCTATAATTACCTTGAGAACAATAGCCTTGCACAAACTCTTCTTGGGCGAGGTTCCAGTAGCCTCCAGTTTGATTGGCAAAGTAGGTCTCGAATTTGCATTGGAATTGCACGTGGGCTTGCCTTCCTTCATGAGGATGTACAGCCATATATCATTCATAGAGATATCAAAGCAAGTAACATTCTTCTTGACCGTGATCTCACTCCTAAGATTTCAGATTTCGGACTTGCGAGGCTCGTTCCAGCCAACATGTCTCACATCAGTACCGGAGTGGCAGGAACAATTGGTTACCTGGCACCCGAATATGCGATAAGAGGGCAGGTGACGAGAAAATCAGACATTTACAGTTTCGGCGTCCTCCTTGTGGAAATAGTCAGCGGGAGATGCAACAAAAATACAAAGTTACCAATTGGAGAGCAGTATCTTCTCGAAACGGCATGGAATCTTTATGAGCGAGGAGAGCTCGTTCTGCTTGTAGATATGTCGTTAAACGGCGACTTCGATGCTGAGGAGGCTTGTAAGTATATTAAGATTGGTCTACTTTGCACACAAGACAGTCCGAAGCTCCGTCCATCGATGTCGACTGTGGTAAAGATGCTAATGGGTGAGATGAGCGTCGAAGATAGAAAGATAACGAAACCGGGGCTGCTTTCGGACTTAATGGATCCAAGAGGAAAGATTCCAGAGAAAAATAAAGGGTCTGATGGTCTGTTCCTTGGAAACTCAACAACGTCATCTGAACCCTCAACTGTTACAACTGCAACCTTCACTGCACAATATGATACCAACAATCTCTCATCTGCACTGTGA 1161 43.93 MTCFPFLFGKRAKSPTGSVGNDEELLGMHNVRLYTYKELKVATEDFSLANKIGEGGFGSVYKGRLRNGKLAAIKVLSAQSRQGLKEFLAETKVISVIEHENLVQLYGCCVENNHRILVYNYLENNSLAQTLLGRGSSSLQFDWQSRSRICIGIARGLAFLHEDVQPYIIHRDIKASNILLDRDLTPKISDFGLARLVPANMSHISTGVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRCNKNTKLPIGEQYLLETAWNLYERGELVLLVDMSLNGDFDAEEACKYIKIGLLCTQDSPKLRPSMSTVVKMLMGEMSVEDRKITKPGLLSDLMDPRGKIPEKNKGSDGLFLGNSTTSSEPSTVTTATFTAQYDTNNLSSAL 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3229856 3233461 + CmaCh04G006290.1 Cma04g00629 291710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00629 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Cma04g00629 386 SMART serkin_6 46 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00629 386 SUPERFAMILY Protein kinase-like (PK-like) 24 317 IPR011009 -
Cma04g00629 386 Gene3D Transferase(Phosphotransferase) domain 1 122 331 - -
Cma04g00629 386 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Cma04g00629 386 Pfam Protein tyrosine and serine/threonine kinase 48 316 IPR001245 GO:0004672|GO:0006468
Cma04g00629 386 MobiDBLite consensus disorder prediction 353 367 - -
Cma04g00629 386 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00629 386 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 2 368 - -
Cma04g00629 386 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 368 - -
Cma04g00629 386 MobiDBLite consensus disorder prediction 339 367 - -
Cma04g00629 386 Gene3D Phosphorylase Kinase; domain 1 18 121 - -
Cma04g00629 386 CDD STKc_IRAK 52 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00629 Cma-Chr4:3229856 Cma01g01267 Cma-Chr1:9127605 1.40E-106 dispersed
Cma04g00571 Cma-Chr4:2906180 Cma04g00629 Cma-Chr4:3229856 3.04E-166 transposed
Cma07g00931 Cma-Chr7:4471466 Cma04g00629 Cma-Chr4:3229856 1.14E-125 transposed
Cma14g00069 Cma-Chr14:314460 Cma04g00629 Cma-Chr4:3229856 2.65E-116 transposed
Cma18g00359 Cma-Chr18:1947657 Cma04g00629 Cma-Chr4:3229856 1.79E-115 transposed
Cma16g00467 Cma-Chr16:2360646 Cma04g00629 Cma-Chr4:3229856 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68471 PF07714 PK_Tyr_Ser-Thr 1.10E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00629 - - csv:101216433 623.624