Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00636 ATGCATGATCAAGATTCCTGTTCCATCCCTGGTGAAGGGAAATCCGTGCCGGAATTTACCTCGACTTCTCTTGATCTAGGTATCTCTGCTGCTTCTCCCGATATTCCAGTCAATAACTACTGTGATTCACCAGAAATCTTGGATATTAAGTGTTGTAAACTTATGGAATCTCCCGTAGAGCTTTCCTTTGAAAATAGCTTTACGGGTGTTGAGGTTAGCTATAACCAGATAACCCCATCTGTTAGATTTTCCAAGTTGTATGAAACATATGAGCAAGAGCTGTCTCCAGAATCTTCCTTTGAGTTGGCTCCTTCTCCAGCTACCAGTTCTTTGAAAACTGAAGAACTCCTTCAAGCTATAAGTGTCAATGCAGGTGCTCCAAGTGATGCTGTGGATTTGGATGGGATAAACTATGGGGAAGACAATTGGTATAAGGGTGGTGATACCATTAGGTCTGATGAAATTGAGCATCCTCTGTATCAAACGGCTCGTTTTGGGGATTTTTGTTACAATTTCTCATCATTGGAACCTGGGAATTATGTTGTTGACCTGCATTTTGCTGAAATTGTATTTACCAATGGCCCACCTGGTATGAGGGTGTTTGATGTCTATTTGCAAGACCAGAATGTTGTTTCTGGCCTGGATATATATGCTCGTGTCGGTGGGAATAAGCCTCTCATTATATCTGACCTCAAAACTTCTGTCGATGTAAAAGATTTAACCATTAGATTTGAAGGACAGATGGGCAGGCCAATTGTTTGTGGTATTTCTGTGAGGAAAGATCTCCCTTCAAATAGAAAAGAAGTTGAACTGCTTGAAGAAACGCGATCATCTCAACTATCCAACGGGGAGATGTCCAAAGATAGTGATGACTTGATAGTAAAAGAGAAGTGCCTAGTGCTGCAAAAGGATCTTGAGCTCATGAAGAATGAGCTAGCAGCAGCAAGGAAGAACATGGAGGAACTTAGAAAGGAAAACAATCAAAAGAGTAGAGAATGTCAAGAAGCTTGGAAGTCTTTAAATGAGCTGCAAAATGAGCTCATGCGCAAGTCAATGCATGTTGGATCTCTTGCTTTTGCCATTGAGGGACAGGTGAAAGAGAAGGGCAAATGGTTTTCTTCGTTGAGAGACCTTACCAGAAAACTAAAGATTATGAAAATAGAAAACATCAAATTATCAGAGGAGGCATTGGCATTCAAGAACTGCTTTGTGGATATGAATGAAATGACTTCAAAAATTCAGACAGCAGTTAAACAGCAATTAGATATGCAAGAAACCCTGAAGACTAAATTTGTTGAAGGAGCTAAGGAACGGAAAGAACTCTACAATAAGATGTTGGAGTTGAAAGGAAACATTAGGGTCTTTTGTCGATGTAGACCTTTAAATACAGAAGAGATTTCTTCTGGAGCTTCAATGGTTGTTGATTTTGAGTCAGCCAAAGATGGCGAGTTGATTGTTAAGTCAAATGGGGCTCCCAGAAGGATCTTTAAGTTTGATTCTGTATTTGGTCCTCAGGCAAATCAAGGAGATGTGTTTGAAGATACTGCGCCATTTGCAGCTTCAGTTCTAGATGGTTACAATGTTTGTATATTTGCATATGGCCAAACCGGGACTGGAAAAACTTTTACAATGGAGGGCACTGAGGGAGCTCGTGGAGTCAATTATAGGATTCTTGAGGAGCTGTTTCGCTTGACAAAGGAACGCCAGAAGCTACATCGATACAAAGTATCTGTTAGTGTCTTGGAAGTGTATAATGAGCAAATACGGGACTTGCTAGTCTCAGCATCTCAGTCAGGAAATGGTTCAAAAAGGCTCGAAGTAAGACAAATCAGTGAAGGAATACATCATGTTCCTGGCATGGTAGAGGCAACTGTCGACGACATGAGTGAGGTTTGGGAAGTTTTACAAACTGGCAGCAATGCAAGAGCTGTTGGTTCAACCAATTGTAATGAGCACAGCAGCCGTTCCCACTGCATACACTGTGTGATGGTGAAGGGGGAGAATTTGCTAAATGGGGAATGCACAAGTAGCAAACTCTGGTTGGTGGACTTGGCAGGTAGCGAACGGATTGCTAAAGTAGAAGTACAGGGAGAACGACTAAAGGAAACACAAAATATTAATAGATCTCTTTCTGCACTTGGTGATGTTATATCCGCTCTCGCCACAAAAAGCCCTCATGTTCCTTTTAGGAACTCCAAGCTCACTCATTTGCTTCAAGATTCACTAGGGGGAGACTCAAAGACACTCATGTTTGTACAGATCAGTCCCAATGAAAATGACTTGAATGAGACTCTTTGCTCATTAAACTTTGCGAGCAGAGTAAGAGGAATTGAGCTGGGTCCTGCTAAGAGACAACTTGATATGTCTGAATTCCACAAATGCAAACAGATGGCTGAGAAAACAAAGCTGGATATGAAGAGTAAAGATCTGCAGATCAGAAAGATGGAAGAAACAATGCATGGATTAGACTTGAAGCTGAAGGAAAAAGATCAGAAAAACAAAAGTCTACAGGATAAGGTCAAAGAACTTGAAGCTCAACTTCTTGTTGAAAGAAAGCTAGCACGTCAACATGTTGATGCCATAGTAACAGAGCAGATACAGCAGCAGCAGCAGCAGCATATGAAAACTGAATCAGAAGACCACAAGTCTGCACCGGCGAGGCCACAACTTGCTGCGAGTCGACCATTAGGTAGTCAAAAAATTCTCCATGGATCGTCATATAACAGCATACTAGGAAAGAAGCAAATAAATCTCACTCGCCCACTAACTGAGAACAACGGCTCCAAACCGTCATTTCCCTTTCCTTCAGTGGATAGTGCCATCAAGTACCCTGATTCCACAGAGAAGGAAAACAACCCAGAGATGGCTGAGCAATCTCTTGTGCCAACAAGGAGGACAGGAAGAGCCTCTATTTGCCCAATGGCAGCTCGGCGTGTACCGATGGCCCTCGCTCCTAGGAGAATCTCCCTAACTCCTCTACCAAGCATACCGAGCTCAACTCATCTTCCATCACCAATGCTGCAATTGCCACCATCATATCAAGTTGAGAAGATAGAGAAAGGCGATGGATCTGAGGACAGTAACTTGTCTGAACAGGCGGCGCAATGCGAGAGTCCTAAAGAGAGAAAGTATGGAGGTAAGAAGTTGAGCAACATGTTGAGACGAAGCCTTCAAAAGAAGAAGGTACAACAAATGAAGTCTCCAGTGCAGCAACAGGTGAGAAGAGGTGGTGGTATCAATCTGGGGTTGGAGAAAGTCAGGGTGTCGATTGGAAGTCGGGGACGGCTGGCGGCGGCGCACAGGGTGTTGTTGTTAGGAGGAGGAGGAGGCAATGGTAGAAGAGGAGTTGCGAAAGAAACTCAAAGTAAGAAGGAAAAGGAGAGGGGTTGGAATATTGGAACAGCAGTAGGGAGGACTGTTATTTAA 3426 42.91 MHDQDSCSIPGEGKSVPEFTSTSLDLGISAASPDIPVNNYCDSPEILDIKCCKLMESPVELSFENSFTGVEVSYNQITPSVRFSKLYETYEQELSPESSFELAPSPATSSLKTEELLQAISVNAGAPSDAVDLDGINYGEDNWYKGGDTIRSDEIEHPLYQTARFGDFCYNFSSLEPGNYVVDLHFAEIVFTNGPPGMRVFDVYLQDQNVVSGLDIYARVGGNKPLIISDLKTSVDVKDLTIRFEGQMGRPIVCGISVRKDLPSNRKEVELLEETRSSQLSNGEMSKDSDDLIVKEKCLVLQKDLELMKNELAAARKNMEELRKENNQKSRECQEAWKSLNELQNELMRKSMHVGSLAFAIEGQVKEKGKWFSSLRDLTRKLKIMKIENIKLSEEALAFKNCFVDMNEMTSKIQTAVKQQLDMQETLKTKFVEGAKERKELYNKMLELKGNIRVFCRCRPLNTEEISSGASMVVDFESAKDGELIVKSNGAPRRIFKFDSVFGPQANQGDVFEDTAPFAASVLDGYNVCIFAYGQTGTGKTFTMEGTEGARGVNYRILEELFRLTKERQKLHRYKVSVSVLEVYNEQIRDLLVSASQSGNGSKRLEVRQISEGIHHVPGMVEATVDDMSEVWEVLQTGSNARAVGSTNCNEHSSRSHCIHCVMVKGENLLNGECTSSKLWLVDLAGSERIAKVEVQGERLKETQNINRSLSALGDVISALATKSPHVPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDLNETLCSLNFASRVRGIELGPAKRQLDMSEFHKCKQMAEKTKLDMKSKDLQIRKMEETMHGLDLKLKEKDQKNKSLQDKVKELEAQLLVERKLARQHVDAIVTEQIQQQQQQHMKTESEDHKSAPARPQLAASRPLGSQKILHGSSYNSILGKKQINLTRPLTENNGSKPSFPFPSVDSAIKYPDSTEKENNPEMAEQSLVPTRRTGRASICPMAARRVPMALAPRRISLTPLPSIPSSTHLPSPMLQLPPSYQVEKIEKGDGSEDSNLSEQAAQCESPKERKYGGKKLSNMLRRSLQKKKVQQMKSPVQQQVRRGGGINLGLEKVRVSIGSRGRLAAAHRVLLLGGGGGNGRRGVAKETQSKKEKERGWNIGTAVGRTVI 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3259184 3264734 + CmaCh04G006360.1 Cma04g00636 291717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00636 1141 Coils Coil 375 395 - -
Cma04g00636 1141 MobiDBLite consensus disorder prediction 865 894 - -
Cma04g00636 1141 Pfam Malectin domain 120 256 IPR021720 -
Cma04g00636 1141 Pfam Kinesin motor domain 457 777 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma04g00636 1141 ProSiteProfiles Kinesin motor domain profile. 451 777 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma04g00636 1141 CDD KISc_C_terminal 449 779 - -
Cma04g00636 1141 MobiDBLite consensus disorder prediction 1019 1043 - -
Cma04g00636 1141 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 22 1115 - -
Cma04g00636 1141 Gene3D Kinesin motor domain 395 779 IPR036961 -
Cma04g00636 1141 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 812 IPR027417 -
Cma04g00636 1141 ProSitePatterns Kinesin motor domain signature. 677 688 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cma04g00636 1141 PRINTS Kinesin heavy chain signature 525 546 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma04g00636 1141 PRINTS Kinesin heavy chain signature 647 664 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma04g00636 1141 PRINTS Kinesin heavy chain signature 678 696 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma04g00636 1141 PRINTS Kinesin heavy chain signature 727 748 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma04g00636 1141 PANTHER KINESIN-LIKE PROTEIN KLP-3 22 1115 - -
Cma04g00636 1141 Coils Coil 298 332 - -
Cma04g00636 1141 Gene3D - 118 262 - -
Cma04g00636 1141 Coils Coil 812 853 - -
Cma04g00636 1141 MobiDBLite consensus disorder prediction 945 964 - -
Cma04g00636 1141 SMART kinesin_4 449 785 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00636 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101222343 1819.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00636 Cma16g00466 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01154 Cma-Chr1:8429785 Cma04g00636 Cma-Chr4:3259184 2.27E-93 dispersed
Cma03g00840 Cma-Chr3:6306354 Cma04g00636 Cma-Chr4:3259184 7.38E-69 dispersed
Cma04g00636 Cma-Chr4:3259184 Cma05g01136 Cma-Chr5:8883021 1.55E-173 dispersed
Cma18g00327 Cma-Chr18:1749172 Cma04g00636 Cma-Chr4:3259184 7.77E-92 dispersed
Cma16g00466 Cma-Chr16:2343498 Cma04g00636 Cma-Chr4:3259184 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g956 . . . . Bpe09g00290 . . Bma13g00898 Cmo16g00505 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0984 . . . . . Blo10g00686 . . . . . . . . . Cma04g00636 Cma16g00466 Car04g00595 Car16g00421 . Cpe01g00574 . . . . . . . Cla07g01010 Cam07g1087 Cec07g1159 Cco07g1137 Clacu07g1061 Cmu07g1052 Cre07g1428 . . Chy07g01045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003005 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00636 Cma_Chr04 FPKM 3.507597 3.495428 0.354777 0.221798 14.112417 15.400474 14.40988 0.200151 0.079012 0.11494