Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00637 ATGGAGGACGATTCAGATCTCGACTTCAGCTTCACCAGCACCATCTCCACCTCTACCGCTCGCAGCAGCCTCGCTCGGAGCAGCTTAACTCTCAGCTTTAACGAATCCCGCGGCTCCTCCGCCCTTAACCTCCGTCCCCACCACCACTCCGACCCACACTGGTCCGCCATCAAAGCTGCCACTACTCTTTCCTCCGACGGCAACCTCCACCTCCGCCACCTGAAACTCATCAAACACCTCGGCACTGGCAACCTCGGCCGGGTTTTCCTCTGCCATTTGAGAGACAACGATCACGCCAATTTTGCCCTCAAGGTCGTTGACAGAGACGCTTTAAGTAACAAGAAGCTTTTGCAGGTTCAAATGGAATCCGAGATTCTCGCTTTGCTCGACAATCCATTTCTCCCTACTCTCTACGCGCGTCTCGACGTCTCTCACTACACGTGCCTCCTTATTGACTACTGCCCAGCCGGTGACCTCCACTCTCTCCTCCGCAAACAGCCTGGAAACCGCCTCTCCGTTTCGGCGGCGAGATTCTTCGTCGCTGAGGTTCTGGTGGCGCTTGAGTATCTTCACGCGCTTGGGATTGTGTACCGGGATCTCAAGCCTGAGAACGTTCTTTTGCGTGAGGATGGCCACGTCATGCTCACTGATTTCGATTTGTGCTTTAAGTCCGACGTTGTCCCCACTTTTCACACGTCGACACAGCGGGGACCACAGGGTGCTGCCTGCTGCTTTGGGATGGGGACCGCGGCGGAGGAGATTGTCGGGGAGTTTGTGGCGGAGCCGACGACGGCCTTTTCGAAGTCATGTGTAGGGACTCACGAGTATTTGGCGCCTGAGTTGTTAACCGGCGGTGGTCATGGAAACGCCGTCGACTGGTGGGCGTTTGGGGTGTTCATTTACGAGCTGCTGCACGGAACGACGCCGTTTAAGGGAGTGAACAAGGAGGGTACGCTTAGAAACATAGCGTCGACAGAAGGGGTGAAGTTCAAGGCGGCGATGGAGGAAGAGGAAGGTATAGAGGAGGCAAGGGATCTGGTAGAGAGACTACTGGTGAAAGATCCGGCGAGACGGTTGGGATCCGGGAAAGGGGCGACGGAGATCAAACGTCATCCATTCTTCAACGGTATAAAATGGCCGTTAATCCGGATGTATCGGCCGCCGGAGGTGTACGGATTGATGAGAAAAGCCAGATCACACGTGAGGCACGTGCGTGACGTCAACCACCGCATGCGGCGTCGGGGCTGGTGGAACTGGAGAAAGCTCAGTAACTATTTAATTAAAAACGGAATTTCCAGTAAATCTCATACCAATACCAATTCCAATACCAATCATTACAGATTTAACGCCAAAAATAAAATGGCTTAA 1368 53.95 MEDDSDLDFSFTSTISTSTARSSLARSSLTLSFNESRGSSALNLRPHHHSDPHWSAIKAATTLSSDGNLHLRHLKLIKHLGTGNLGRVFLCHLRDNDHANFALKVVDRDALSNKKLLQVQMESEILALLDNPFLPTLYARLDVSHYTCLLIDYCPAGDLHSLLRKQPGNRLSVSAARFFVAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLTDFDLCFKSDVVPTFHTSTQRGPQGAACCFGMGTAAEEIVGEFVAEPTTAFSKSCVGTHEYLAPELLTGGGHGNAVDWWAFGVFIYELLHGTTPFKGVNKEGTLRNIASTEGVKFKAAMEEEEGIEEARDLVERLLVKDPARRLGSGKGATEIKRHPFFNGIKWPLIRMYRPPEVYGLMRKARSHVRHVRDVNHRMRRRGWWNWRKLSNYLIKNGISSKSHTNTNSNTNHYRFNAKNKMA 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3267258 3268625 + CmaCh04G006370.1 Cma04g00637 291718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00637 455 ProSiteProfiles Protein kinase domain profile. 74 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00637 455 Gene3D Transferase(Phosphotransferase) domain 1 158 383 - -
Cma04g00637 455 SUPERFAMILY Protein kinase-like (PK-like) 51 404 IPR011009 -
Cma04g00637 455 Pfam Protein kinase domain 76 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00637 455 CDD STKc_phototropin_like 72 390 - -
Cma04g00637 455 Coils Coil 333 353 - -
Cma04g00637 455 PANTHER SERINE/THREONINE-PROTEIN KINASE WAG1 3 404 - -
Cma04g00637 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Cma04g00637 455 SMART serkin_6 74 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00637 455 PANTHER FLIPPASE KINASE 1-RELATED 3 404 - -
Cma04g00637 455 Gene3D Phosphorylase Kinase; domain 1 73 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00637 Cma-Chr4:3267258 Cma05g01306 Cma-Chr5:9908568 4.80E-114 dispersed
Cma04g00637 Cma-Chr4:3267258 Cma12g01220 Cma-Chr12:9513718 2.30E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68472 PF00069 Pkinase 2.10E-52 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00637 - - bhj:120087146 732.25