Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00639 ATGGTCCATAGCATTGGAAGTTGCAGAAAATGGACTGTTTTCACCGCATCCTTTCCCCTTTTGTCCTTTCTCTTCTCTCTCCACTATTCCATTTTGTCCCACTTTCTACCAAATGGGTCCACTCTCAAACTCGCTCTCAATCCCTCAAAACTCATAGCCCTAAAGCGGCGCTCTCCCTTTGAGTTTCTTCTTCCCCATTTGGCAACAATGGCAGAGGAAGTGAAGCTCTTGGATTTCTGGCCCAGCATGTTCGGGATGCGAGTCAAAGTAGCCCTGGCCATGAAGGGCGTGGCGTACGAATACGTGGAACAAGATCTAAGAAACAAGAGCCCTCTGCTTCTGGAAATGAACCCAATTCACAAGAAGATCCCTGTTCTTGTTCATAACGGAAAACCCATCTGCGAATCATCCATTATAGTTCAGTACATCGATGAAACGTGGAAGAACAGAGCTCCTCTGTTACCGTCTGATCCTTACGAGAGGGCTCAGGCCAGGTTTTGGGTGGATTTCATCGACAAGAAGGTGTTTGAGAGTGGGAGGAAGATCTGGGCGAGCAAGGGAGAAGAGCGTGAAGAAGGGAAGAAGGAGTTCATGGGAAGCTTGAAGAAGCTGGAGGAAGTTCTTGGGGAGAAGGCTTACTTTGGAGGCGAGAGTGTGGGGTTTGTGGACATTGTTTTGATTGGATACTACACCTGGTTTTACAGCTACGAGAGCATTGGGAACTTCAGCGTTGAGGCTGAGTGCTCCAAGATAATGGGATGGGCTAAGAGATGCTTGCAAAATGAGAGCCTTTCTAACTCCCTGCCTGACCCCTTCAACATCTGTGACTTTGTGCTTCTAATGAAGAAAAAGTATGGCCTTGAATGA 867 47.52 MVHSIGSCRKWTVFTASFPLLSFLFSLHYSILSHFLPNGSTLKLALNPSKLIALKRRSPFEFLLPHLATMAEEVKLLDFWPSMFGMRVKVALAMKGVAYEYVEQDLRNKSPLLLEMNPIHKKIPVLVHNGKPICESSIIVQYIDETWKNRAPLLPSDPYERAQARFWVDFIDKKVFESGRKIWASKGEEREEGKKEFMGSLKKLEEVLGEKAYFGGESVGFVDIVLIGYYTWFYSYESIGNFSVEAECSKIMGWAKRCLQNESLSNSLPDPFNICDFVLLMKKKYGLE 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3269916 3271375 - CmaCh04G006390.1 Cma04g00639 291720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00639 288 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 72 281 IPR045073 -
Cma04g00639 288 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 157 277 IPR010987 -
Cma04g00639 288 Gene3D - 157 288 - -
Cma04g00639 288 SUPERFAMILY GST C-terminal domain-like 145 285 IPR036282 -
Cma04g00639 288 Pfam Glutathione S-transferase, C-terminal domain 184 260 IPR004046 -
Cma04g00639 288 SUPERFAMILY Thioredoxin-like 74 175 IPR036249 -
Cma04g00639 288 Pfam Glutathione S-transferase, N-terminal domain 73 145 IPR004045 -
Cma04g00639 288 CDD GST_C_Tau 158 271 IPR045074 GO:0004364|GO:0006749
Cma04g00639 288 SFLD Glutathione Transferase (cytosolic) 70 286 IPR040079 -
Cma04g00639 288 SFLD Main.3: Omega- and Tau-like 70 286 IPR045073 -
Cma04g00639 288 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 72 281 - -
Cma04g00639 288 CDD GST_N_Tau 74 147 - -
Cma04g00639 288 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 72 151 IPR004045 -
Cma04g00639 288 Gene3D Glutaredoxin 70 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00639 Cma-Chr4:3269916 Cma16g00465 Cma-Chr16:2333498 3.60E-123 dispersed
Cma04g00638 Cma-Chr4:3268691 Cma04g00639 Cma-Chr4:3269916 4.03E-74 tandem
Cma04g00639 Cma-Chr4:3269916 Cma04g00640 Cma-Chr4:3271577 2.52E-117 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00639 K00799 - csv:101217848 370.933