Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00640 ATGGCGGAGGAGGTGAAAGTGTTGGATTTTTGGCCCAGCATGTTCGGGATGCGTGTTAGAATGGCTCTGGCTGAGAAGGGCGTGGCCTACGAATATGTGGAACAAGATTTGAAAAACATGACCCCTTTGCTTCTGGAGATGAATCCAGTTCACAAAAAGGTACCTGTTTTTGTTCATAATGGAAAACCCATCAGTGAATCTTCCATTATCATTCAGTACATTGATGAAGTATGGAAGGACAGAGGTCCTCTGCTGCCGTCTGATCCTTACGAGAGGGCTGAAGCCAGGTTCTGGGTGGATTTCATCGACAAGAAGATATACATGAGCAAGGGAGAAGAGCAGGAGACAGGCAAGAAGGAGGTGATAGCAATTTTGAAGCAACTGGAAGAAGCTCTTGGGGAGAGGGCCTACTTTGGAGGAGAGTGTTTGGGGTTCGTAGACATTGCCTTGATTGGATTCTCATCTTGGTTTTATAGCTACGAAACCATTGGGAATTTCAGCATTGAAGCTGAGTGTCCCAAGATCATGGTTTGGGTGAAGAGATGCCTGCAAAAGGAGAGCGTTTCAAGCTCCCTGCCTGACCCCATCAAAGTCTATCACTTCTTGCTTAAAGACAGGAAAGCGCTTGGCCTTGACTAA 639 46.48 MAEEVKVLDFWPSMFGMRVRMALAEKGVAYEYVEQDLKNMTPLLLEMNPVHKKVPVFVHNGKPISESSIIIQYIDEVWKDRGPLLPSDPYERAEARFWVDFIDKKIYMSKGEEQETGKKEVIAILKQLEEALGERAYFGGECLGFVDIALIGFSSWFYSYETIGNFSIEAECPKIMVWVKRCLQKESVSSSLPDPIKVYHFLLKDRKALGLD 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3271577 3272321 - CmaCh04G006400.1 Cma04g00640 291721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00640 212 CDD GST_C_Tau 89 204 IPR045074 GO:0004364|GO:0006749
Cma04g00640 212 SFLD Main.3: Omega- and Tau-like 2 209 IPR045073 -
Cma04g00640 212 Gene3D Glutaredoxin 1 87 - -
Cma04g00640 212 CDD GST_N_Tau 5 78 - -
Cma04g00640 212 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 207 IPR045073 -
Cma04g00640 212 PANTHER S-TRANSFERASE TAU 22, PUTATIVE-RELATED 4 207 - -
Cma04g00640 212 Pfam Glutathione S-transferase, C-terminal domain 111 185 IPR004046 -
Cma04g00640 212 SFLD Main (cytGST) 2 209 - -
Cma04g00640 212 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cma04g00640 212 Gene3D - 88 212 - -
Cma04g00640 212 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 211 IPR010987 -
Cma04g00640 212 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
Cma04g00640 212 SUPERFAMILY GST C-terminal domain-like 76 206 IPR036282 -
Cma04g00640 212 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00640 Cma-Chr4:3271577 Cma16g00464 Cma-Chr16:2326120 7.03E-116 dispersed
Cma04g00639 Cma-Chr4:3269916 Cma04g00640 Cma-Chr4:3271577 2.52E-117 tandem
Cma04g00640 Cma-Chr4:3271577 Cma04g00641 Cma-Chr4:3273122 2.11E-90 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00640 K00799 - csv:101217848 331.643