Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00649 ATGGTGGTTTTGTCTAAGCCATCTATCAAACAGATGGCTTCTTCCTACATGAGAAACTCCATGGCTGCTGCTGGTTCTTCCTCTGCTGCATTTTTCTCTGGGGTTCCGTTGATTGACCTTTCTGCACCAGATGCTAAGCATCTTATCGTCAAGGCCTGTGAAGAGCTTGGATTCTTCAAGGTCGTCAACCATGGCGTTCCCATGGAATTCATCTCCACTCTTGAATCAGAATCCACCAAATTCTTCTCCCTTCCCCTCTCTGAAAAACAGAGGGCCGGCCCCCCTTCTCCTTTTGGCTATGGCAATAAACAAATTGGCCGCAATGGCGACGTGGGCTGGGTTGAATATCTCCTCTTGAATACGCACCTTGAGTCCAAATCTGATGGGTTCCTCTCCATTTTTGGCCAAGACCCACAAAAGCTCCGCTCTGCTGTGAACGATTACATCTCGGCTGTGAGAAACATGGCGTGTGAAATCCTTGAACTAATGGCGGAAGGTTTGAAGATTCAGCAGAGGAATGCGTTCAGCAAGCTGTTGATGGATGAAGAGAGCGACTCTGTTTTCAGGGTGAACCATTACCCGCCATGTCCAGAGCTTCATGCTTTGAAAGGGACAAACATGATTGGATTTGGAGAACACACAGACCCACAGATCATTTCGGTTTTGAGATCGAATAACACTTCAGGACTTCAAATATCTCTTGCTGATGGGAATTGGATTTCCGTTCCTCCCGATCAAAGCTCCTTCTTCATCAACGTAGGTGACTCTTTACAGGTGATGACGAATGGAAGATTCAAAAGCGTGAAGCACAGAGTATTGACGAACAGGTTGAAGTCAAGAGTTTCAATGATATACTTCGGGGGGCCGCCGTTGAGTGAAAAGATAGCGCCGTTGCCTTCGCTCATGAAAGGAGAAGAAAGTTTGTACAAAGAGTTCACTTGGTTCGAGTACAAAAGATCAGCTTACAACTCCAGGTTGGCAGATAACAGGCTTGTGCACTTTGAGAGAATTGCAGCCTCATGA 1023 46.53 MVVLSKPSIKQMASSYMRNSMAAAGSSSAAFFSGVPLIDLSAPDAKHLIVKACEELGFFKVVNHGVPMEFISTLESESTKFFSLPLSEKQRAGPPSPFGYGNKQIGRNGDVGWVEYLLLNTHLESKSDGFLSIFGQDPQKLRSAVNDYISAVRNMACEILELMAEGLKIQQRNAFSKLLMDEESDSVFRVNHYPPCPELHALKGTNMIGFGEHTDPQIISVLRSNNTSGLQISLADGNWISVPPDQSSFFINVGDSLQVMTNGRFKSVKHRVLTNRLKSRVSMIYFGGPPLSEKIAPLPSLMKGEESLYKEFTWFEYKRSAYNSRLADNRLVHFERIAAS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3321297 3322998 - CmaCh04G006490.1 Cma04g00649 291730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00649 340 PANTHER GIBBERELLIN 2-OXIDASE 25 337 - -
Cma04g00649 340 Pfam 2OG-Fe(II) oxygenase superfamily 185 287 IPR044861 -
Cma04g00649 340 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 25 337 - -
Cma04g00649 340 Pfam non-haem dioxygenase in morphine synthesis N-terminal 35 126 IPR026992 -
Cma04g00649 340 Gene3D - 2 328 IPR027443 -
Cma04g00649 340 PRINTS Isopenicillin N synthase signature 49 66 - -
Cma04g00649 340 PRINTS Isopenicillin N synthase signature 213 234 - -
Cma04g00649 340 PRINTS Isopenicillin N synthase signature 249 275 - -
Cma04g00649 340 SUPERFAMILY Clavaminate synthase-like 9 328 - -
Cma04g00649 340 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 183 289 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00649 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - csv:101215820 594.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01399 Cma-Chr3:8817543 Cma04g00649 Cma-Chr4:3321297 2.32E-141 dispersed
Cma04g00649 Cma-Chr4:3321297 Cma13g00536 Cma-Chr13:5582531 5.54E-157 dispersed
Cma16g00453 Cma-Chr16:2269857 Cma04g00649 Cma-Chr4:3321297 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g897 . . . . . . . . . Cmo04g00699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g00649 . Car04g00603 . . Cpe01g00585 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004421 1 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00649 Cma_Chr04 FPKM 1.839416 2.782534 0.969621 0.748531 2.149422 0.959293 1.809763 0.0 0.160628 0.084617