Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00653 ATGTTTCTACCTAACTCCCCCTCTCCCTCTGCCTATATATATTCTCCACGCGTTTCAAGTTCATTTCTGAAAAAGCAATCCATCTCTCACGATCTGCGTCGCTTTTTTGCCGCTCATTCAGCTGGTTTTTCTTTGTTGCATTCCACTTTCGCTTCTTCTGGGTTTCTGCTGCTTGTCTTGTTTGGTGGGAATTTGAGGGTTCTGTGGGTTTTTCTCTTCTCGATCTGGGGTTTTTGTTTTTTGGCTTCTGGGGTTTTTGAGATCGATCTTCGAATGTGGGAGGCCAAGAAGATCAACTTTTTTACTGAATATGGGGATGCTAATAGATATAAGATTCTTGAAGTTATAGGCAGGGGAAGTTACGGAGTTGTTTGTTCTGCTATTGACATGCAAACCAAAGAGAAAGTTGCAATAAAGAGAATTCATGATATATTTGATCATGTATCTGATGCTGTTCGAATCCTTCGTGAAGTTAAGTTGCTTAGATTGTTGCGGCATCCTGATATTGTTGATATCAAGCACATCATGTTGCCACCTTCTAAAAAGGAATTTAAGGACATTTATGTGGTGTTTGAGCTTATGGAATCTGATCTTCATCAAGTTATTAAAGCAAATGATGATTTGACCCGTGAACATCATCAGTTCTTCCTCTATCAAATGCTACGTGCATTGAAATTCATGCATACAGCAAATGTCTATCATAGAGATCTGAAGCCGAAGAATATACTGGCAAATGCTAATTGCAAGCTTAAAGTTTGTGATTTTGGACTTGCTAGAGCTGCTTTCAGTGATGTCCCAACTACAATATTTTGGACAGACTATGTTGCTACTAGATGGTATAGAGCTCCAGAGCTGTGTGGATCGTTCTGTTCGAAGTATACTCCAGCGATAGATATTTGGAGCATTGGCTGCATATTTGCTGAGGTTTTGATAGGGAAGCCACTGTTTCCTGGTAAAAGTGTTGCCCATCAATTGGAGTTGATTACTGATCTTCTTGGGACTCCCTCTTTGGAAATCATTGCAGGAGTTAGGAACGAAAAGGCCAGGAAATATTTGACCGAAATGAGAAAGAAATCTCCAGTTCCATTTTCACAAAGATTTCCCAATGCGGATCCTGCAGCCATCCGCTTATTACAAAGACTATTAGCATTTGATCCGAAGGATCGACCATCCGCTGTGGAGGCTCTGGCTGACCCTTACTTTAAGGGCCTAGCTAAAGTTGATAGAGAGCCCTCTTGTCAGCCAATAGCAAGAGTGGAATTTGAGTTTGAGAGACGGAAATTAACAAAGGATGACATAAGGGAACTATTATACAGAGAAATATTAGAATATCATCCTCAAATTCGTGAAGATTATTTGAATAGAGCTGAGACTACAAAGCTCCTCTATCCTAGTACTCCTATCATTGTCAGCGTTACAGGTCATTTTAGAAGCCAATTCACCTACCTCAAGGAGAATGGTGCTAAAAGCGCACCGGTTTTGCCTCTAAATCGGAAACACTTCTCCCTCCCACGGTCCACGGTTTGCACAAATTTGGATTCACCTGATCGTGAACCGGTTCGGCGAAATCCGAAAGTCCCTAATAACAGCATGGGATTATCTGATAGAAAATTTGGGAATCCATCAAAGGCTCATCCTCCTCACAAAGTGCCTACTGGAATGATGTCTGTCATATGCCAGAGCCTTGATTTTGGAAGGTATGTTTTGGATCATGTTGCTTGTGGCTGTTCTTCCAATACTCCATTGGATCGATGTGCGGTGAGGAGTTATGTTAAACCGTGTTCTAAGGGTAGAAAGACGCGACACCAAACTCGAACTTTGATTTGTTCCCGACGAAATATTGGGCAGTGCAGAGTGTTTTCAACTACCCAACCGGAAACTGTATTGAATGGCAATTCTCAACCATTCTTGGAACTGAGGAAGGAGCCCAGAACCCCAATCTCGTCGACAAATTTGTTTGAAGTTGTAGCCGATGATCTCCAGAAGCTTAACCAAAATCTTCTGTCTATGGTTGGTGAGGAGAACCCAGCTTTGGTATCTGCTGCTCAGCGGATATTTGGTGCTGGAGGGAAGAGGATGAGACCAGCTCTAGTATTCCTGGTGTCAAGAGCAACGGCCGGATTAGTTGGGTTAGAGGAACTCACTGTGGAGCATCGACGTTTGGCAGAGATCATTGAAATGATCCACACTGCAAGCTTGATACACGACGATGTATTAGACGATAGCGATATGAGAAGAGGGAAGGAAACCTTGCACCAATTATATGGTACCAGAGTGGCAGTGCTAGCTGGAGATTTCATGTTTGCACAGTCATCATGGTGTCTTGCTAACCTCGAAAATCTCGAAGTCATTAAGCTTATCAGTCAGGTTATTAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCATCAAGCCTGTTTGATTGTGAAGTTGAACTTGAAGAGTATCTGACCAAAAGCTATTATAAAACAGCCTCCTTGATTGCTGCTAGCACGAAAGGTGCCGCGATCTTTAGCGGGGTTGACCGTGATACTACTGAGAAGATGTACGAGTATGGAAGGAATCTCGGTCTTTCGTTCCAAATTGTCGACGACATTTTGGATTTTACACAATCGACAAAGCAGCTCGGAAAGCCAGCAGGAAGTGATCTGGTTAAAGGAAATCTTACAGCTCCAGTTATTTTTGCTCTTGAGAGAGAGCCTAAACTGAAAGAAATTATCGAAACCGAATTCAGTGAGACTGGGTCGCTAGAAGAAGCGATTGAATTAGTCAAGAGCAGGGGTGGCATTGAAAGAGCACAGGAATTGGCTAAACAGAAGGCAGATCTTGCTATCCAAAACCTACAATGCCTTCCAGAAGGCGTGTTTCGGTTCGCGCTCGAGGATATGGTGACGTTTAATCTAGAACGGATCGATTAG 2916 42.63 MFLPNSPSPSAYIYSPRVSSSFLKKQSISHDLRRFFAAHSAGFSLLHSTFASSGFLLLVLFGGNLRVLWVFLFSIWGFCFLASGVFEIDLRMWEAKKINFFTEYGDANRYKILEVIGRGSYGVVCSAIDMQTKEKVAIKRIHDIFDHVSDAVRILREVKLLRLLRHPDIVDIKHIMLPPSKKEFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKVCDFGLARAAFSDVPTTIFWTDYVATRWYRAPELCGSFCSKYTPAIDIWSIGCIFAEVLIGKPLFPGKSVAHQLELITDLLGTPSLEIIAGVRNEKARKYLTEMRKKSPVPFSQRFPNADPAAIRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVDREPSCQPIARVEFEFERRKLTKDDIRELLYREILEYHPQIREDYLNRAETTKLLYPSTPIIVSVTGHFRSQFTYLKENGAKSAPVLPLNRKHFSLPRSTVCTNLDSPDREPVRRNPKVPNNSMGLSDRKFGNPSKAHPPHKVPTGMMSVICQSLDFGRYVLDHVACGCSSNTPLDRCAVRSYVKPCSKGRKTRHQTRTLICSRRNIGQCRVFSTTQPETVLNGNSQPFLELRKEPRTPISSTNLFEVVADDLQKLNQNLLSMVGEENPALVSAAQRIFGAGGKRMRPALVFLVSRATAGLVGLEELTVEHRRLAEIIEMIHTASLIHDDVLDDSDMRRGKETLHQLYGTRVAVLAGDFMFAQSSWCLANLENLEVIKLISQVIKDFASGEIKQASSLFDCEVELEEYLTKSYYKTASLIAASTKGAAIFSGVDRDTTEKMYEYGRNLGLSFQIVDDILDFTQSTKQLGKPAGSDLVKGNLTAPVIFALEREPKLKEIIETEFSETGSLEEAIELVKSRGGIERAQELAKQKADLAIQNLQCLPEGVFRFALEDMVTFNLERID 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3336026 3345509 - CmaCh04G006530.1 Cma04g00653 291734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00653 971 SFLD Isoprenoid Synthase Type I 679 963 - -
Cma04g00653 971 Pfam Polyprenyl synthetase 678 922 IPR000092 GO:0008299
Cma04g00653 971 TIGRFAM prenyl_cyano: solanesyl diphosphate synthase 647 970 - -
Cma04g00653 971 ProSitePatterns Polyprenyl synthases signature 2. 855 867 IPR033749 -
Cma04g00653 971 CDD Trans_IPPS_HT 673 969 IPR000092 GO:0008299
Cma04g00653 971 Gene3D Phosphorylase Kinase; domain 1 125 447 - -
Cma04g00653 971 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 95 535 - -
Cma04g00653 971 ProSitePatterns MAP kinase signature. 145 248 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma04g00653 971 SUPERFAMILY Protein kinase-like (PK-like) 105 406 IPR011009 -
Cma04g00653 971 ProSitePatterns Polyprenyl synthases signature 1. 733 747 IPR033749 -
Cma04g00653 971 Pfam Protein kinase domain 110 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00653 971 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Cma04g00653 971 ProSiteProfiles Protein kinase domain profile. 110 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00653 971 CDD STKc_TDY_MAPK 109 446 - -
Cma04g00653 971 MobiDBLite consensus disorder prediction 507 549 - -
Cma04g00653 971 SMART serkin_6 110 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00653 971 Gene3D Transferase(Phosphotransferase) domain 1 196 424 - -
Cma04g00653 971 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 95 535 - -
Cma04g00653 971 Gene3D Farnesyl Diphosphate Synthase 647 970 IPR008949 -
Cma04g00653 971 SUPERFAMILY Terpenoid synthases 650 969 IPR008949 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00653 Cma-Chr4:3336026 Cma20g00258 Cma-Chr20:1252413 0 dispersed
Cma20g01116 Cma-Chr20:8807535 Cma04g00653 Cma-Chr4:3336026 8.59E-34 dispersed
Cma16g00446 Cma-Chr16:2221667 Cma04g00653 Cma-Chr4:3336026 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68473 PF00069 Pkinase 1.30E-63 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00653 - K04371 csv:101213897 840.106