Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00655 ATGGGAGACCCGAATCCACGAAGAAGTTGCTTTGACATGGCTACACATTCTCCTAAGAACATCCTCATTACTGGGGCTGCTGGATTTATTGCATCCCATGTTGCTAACAGGCTTGTCAGAAACTATCCTGGCTACAAAATTGTTGTACTTGACAAACTTGATTACTGCTCAAATCTGAAGAATCTTCTTCCTTCTAAGCCATCTCCCAATTTCAAATTTGTTAAGGGGGACATTGGCAGTGCTGATCTTGTCAATTATCTCCTGATTACTGAGTCCATTGATACGATTATGCATTTTGCTGCTCAGACTCATGTTGACAACTCGTTTGGTAATAGTTTCGAGTTCACGAAGAATAATATCTATGGCACACATGTTCTTTTAGAAGCATGCAAGGTCACTGGTCAGATCCGGAGGTTCATCCATGTTAGTACAGATGAAGTATACGGAGAGACAGATGAGGATGCTGTTGTGGGAAACCATGAGGCTTCCCAACTCCTCCCAACAAATCCATACTCTGCAACTAAAGCTGGAGCTGAAATGCTTGTGATGGCCTATGGTAGGTCGTATGGGTTACCTGTGATCACGACGCGAGGAAACAATGTCTATGGACCTAATCAGTTTCCTGAAAAGTTAATTCCAAAGTTCATTCTTTTGGCCATGAGAGGTCAGCCTCTTCCAATTCATGGGGATGGTTCTAACGTTAGGAGTTATCTCTACTGTGAGGATGTTGCTGAGGCTTTTGAAGTCATTCTTCACAAAGGCGAGGTTGGCCATGTTTACAACGTTGGGACAAAGAAGGAGAGAAGAGTTATAGATGTTGCCGAGGATATATGTAGACTTTTCTCAAGGGACGCAAAGGCAAGCATCAAGTATGTAGACAATAGACCATTTAATGATCAGAGGTATTTCTTGGACGATGAAAAACTCAAGAACTTGGGGTGGTCGGAACGGACAACGTGGGAAGACGGGTTGAAGAAGACAATTGAATGGTACACCAAGAACCCTGATTGGTGGGGTGATGTCTCTGGGGCTCTGCTGCCACATCCTAGAATGCTAATGATGCCTGGTGGTGTTGAGAGGCACTTTGAAGGTTCTGAAGAGGGAAAACCTGCTTCTTATGCTTCCTGTAATACTAAAATGATAGTCCCAACTTCCAGGAATCCGGGCTCTCTTTACCAGCCATCCTTGAAATTTTTGCTCTATGGTAGGACAGGGTGGATTGGAGGCCTTCTTGGGCAGCTATGTGATAAACAAGGCATTGCCTATGCTTATGGCAAAGGGCGTTTGGAGGATCGGGCCTCGCTTTTGGCGGATATTCAGAATATTAAACCAACCCATGTTTTCAATGCTGCTGGAGTAACAGGCAGACCCAATGTTGACTGGTGTGAATCTCACAAAACAGAAACAATTCGTGCCAATGTTGCTGGAACCTTAACTTTAGCAGATGTTTGCCGGGAGCACGGACTCTTGATGATCAACTTTGCGACTGGCTGTATATTCGAGTACGATGCCAAACATCCAGAGGGTTCTGGCATTGGATTTAAAGAGGAAGACAAGCCAAATTTCATTGGTTCCTTTTATTCGAAAACCAAGGCCATGGTGGAGGAGCTTCTGAACGAATACGATAACGTCTGCACACTCCGAGTTCGAATGCCGATATCATCTGACTTGAACAACCCACGCAACTTCATTACCAAGATTTCTTGCTACAATAAGGTGGTTAACATCCCAAACAGCATGACCATCCTGGATGAACTTCTGCCCATTTCGATCGAGATGGCGAAGCGTAACTTGAAGGGCATCTGGAACTTCACAAACCCGGGTGTTGTGAGTCACAACGAGATTCTCGAGATGTACAAGAAATACATGGACCCTGAATTCAAGTGGGCTAACTTCACACTGGAAGAACAGGCTAAGGTAATTGTGGCACCCAGAAGCAACAATGAGATGGACAGTTCAAAGCTGAAAAAGGAGTTCCCAGAGTTGCTGGGGATCAAGGAGTCGTTGATCAAGTACGTCTTCGAACCAAACAAGAAAACCTCAGTTTAA 2049 44.51 MGDPNPRRSCFDMATHSPKNILITGAAGFIASHVANRLVRNYPGYKIVVLDKLDYCSNLKNLLPSKPSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGQPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNVGTKKERRVIDVAEDICRLFSRDAKASIKYVDNRPFNDQRYFLDDEKLKNLGWSERTTWEDGLKKTIEWYTKNPDWWGDVSGALLPHPRMLMMPGGVERHFEGSEEGKPASYASCNTKMIVPTSRNPGSLYQPSLKFLLYGRTGWIGGLLGQLCDKQGIAYAYGKGRLEDRASLLADIQNIKPTHVFNAAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMINFATGCIFEYDAKHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLNEYDNVCTLRVRMPISSDLNNPRNFITKISCYNKVVNIPNSMTILDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYKKYMDPEFKWANFTLEEQAKVIVAPRSNNEMDSSKLKKEFPELLGIKESLIKYVFEPNKKTSV 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3351372 3354750 + CmaCh04G006550.1 Cma04g00655 291736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00655 682 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 15 678 - -
Cma04g00655 682 CDD dTDP_GD_SDR_e 19 336 IPR005888 GO:0008460|GO:0009225
Cma04g00655 682 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 396 659 IPR036291 -
Cma04g00655 682 CDD dTDP_HR_like_SDR_e 397 669 - -
Cma04g00655 682 Pfam GDP-mannose 4,6 dehydratase 22 327 IPR016040 -
Cma04g00655 682 Pfam RmlD substrate binding domain 397 551 IPR029903 -
Cma04g00655 682 Gene3D - 212 334 - -
Cma04g00655 682 PANTHER BNAC05G13120D PROTEIN 15 678 - -
Cma04g00655 682 Gene3D - 392 682 - -
Cma04g00655 682 Gene3D - 21 325 - -
Cma04g00655 682 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 344 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00655 K12450 RHM; UDP-glucose 4,6-dehydratase [EC:4.2.1.76] - csv:101208780 1326.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00655 Cma-Chr4:3351372 Cma05g00621 Cma-Chr5:3119882 0 dispersed
Cma16g00428 Cma-Chr16:2136204 Cma04g00655 Cma-Chr4:3351372 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g26 . . . . Bpe09g00271 Bpe08g00995 Bma10g00464 Bma13g00919 . Cmo04g00704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00719 . Bda12g00810 . . Bma07g01155 . . . . Cma04g00655 . . . . Cpe01g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000921 5 5 3 5 5 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 3 2 1 3 2 3 8 2 0 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00655 Cma_Chr04 FPKM 23.442114 29.025696 6.048083 6.161203 22.243454 24.506105 22.674158 2.868785 2.886194 3.010229