Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00656 ATGTTGTGCGTTCGTCCCGTTTCCCAGCTTTCTCCTTCGAACCCTAATTTTCGCTGCGAGAAAATGGCTATGAGGAGATTGCTACTATTTCTTAAGCCATTTGATGCCAATCCTGTTCTCCATTCTGACGGCTTTTCTCGCGTCACCAGCCCTCAGATCTTACGTCACCTAGAGAACAGGCATGCAGTGCACAGGGAGGCCATAAAATTTTGTAAGGATGTTTTGCAGCAGAAGCCTGTGGATTGGGAAGCTGTATTTCGCAATGATCTATCTGAGCCAATTAGCAATGTAGACCTTGTTGTCACGGTTGGTGGTGACGGCACCCTTTTGCAGGCCAGCCATTTATTGGACGAGTCAATTCCTGTTCTTGGAGTAAATTCTGATCCGACACAAGTGGATGAGGTAGAAGAGTTTGGCAATCAGTTTGATGCTTCTAGAAGCACAGGCCATCTTTGTGCGGCAACTGTTAATAACTTTGAGCAAGTATTAGATAGTGTCCTCAGTGGTGTAGCATCCCCTTCCAAGTTGTCAAGGCTATCCATATCTGTAAATTCAGAGTTGCTCACAAAGTATCCTCTCAATGACATATTAATTGCTCATCCATGTCCCGCATCGGTCTCTCGATTCTCGTTCAAAATTAGGAATGAGCAGCCATGTTCGCCCTTGTTGAACTGCCGATCGAGTGGTCTAAGAATTTCGACTGCTGCTGGATCAACAGCTGCGATGCGATCAGCAGGTGGATTTCCCATGCCCATTCTATCTCGGGACCTTCAGTACATGGTACGAGAGCCCATGACCCCAGGAAAACTGTCCAATTTTATGCATGGGATGGTATTGTCAGATCAGTCGATGGAAATGGCCTGGCTGTGTAATAATGGTGTGATTTACATTGATGGTTCTCATGTTTGTCATCCTATTCAATACGGTGATGTCATTGAAATATCTTCCAAGGCCCCGAGGCTGAAAGTTTTCTTGCCTCATCATATGTTGTATACAGCCAGAGAAGAAACTTCAGAGCAACATACATATCCAAAATAG 1038 45.09 MLCVRPVSQLSPSNPNFRCEKMAMRRLLLFLKPFDANPVLHSDGFSRVTSPQILRHLENRHAVHREAIKFCKDVLQQKPVDWEAVFRNDLSEPISNVDLVVTVGGDGTLLQASHLLDESIPVLGVNSDPTQVDEVEEFGNQFDASRSTGHLCAATVNNFEQVLDSVLSGVASPSKLSRLSISVNSELLTKYPLNDILIAHPCPASVSRFSFKIRNEQPCSPLLNCRSSGLRISTAAGSTAAMRSAGGFPMPILSRDLQYMVREPMTPGKLSNFMHGMVLSDQSMEMAWLCNNGVIYIDGSHVCHPIQYGDVIEISSKAPRLKVFLPHHMLYTAREETSEQHTYPK 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3355501 3360358 + CmaCh04G006560.1 Cma04g00656 291737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00656 345 SUPERFAMILY NAD kinase/diacylglycerol kinase-like 77 331 IPR016064 -
Cma04g00656 345 Pfam ATP-NAD kinase N-terminal domain 47 126 IPR002504 GO:0003951|GO:0006741
Cma04g00656 345 Gene3D - 61 187 IPR017438 -
Cma04g00656 345 Gene3D - 188 317 IPR017437 GO:0003951|GO:0019674
Cma04g00656 345 PANTHER NADH KINASE 24 330 - -
Cma04g00656 345 PANTHER NAD KINASE 24 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00656 K00858 ppnK, NADK; NAD+ kinase [EC:2.7.1.23] - csv:101209512 550.051
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g30 . . . . . . Bma10g00463 . . Cmo04g00705 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00813 . . . . . . . . Cma04g00656 . . . . Cpe01g00593 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010160 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00656 Cma_Chr04 FPKM 4.882353 3.900629 8.002288 6.265544 13.326365 11.552965 11.209885 10.912518 10.649749 12.612237