Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00657 ATGAAATGCAATGCTTGCTGGAGAGAACTTGAAGGGCGAGCTATCTCCACAACTTGTGGTCACTTGTTGTGCACAGAGGATGCAAGCAAGATCCTTAGCAATGATGGAGCCTGCCCCATTTGTGATCAAGTTCTTTCTAAAAGCCTCATGAAACCCGTGGACATCAATCCAAATGATGAATGGGTAAATATGGCCATGGCTGGTATAAATCCTCAGATATTGATGAAAAGTGCATATAGAAGTGTAATGTTTTATATTGGACAAAAGGAATTGGAGATGCAGTACAAAATGAACAGAATCGTGGCTCAATGCCGACAGAAATGTGAAGTTATGCAAGAAAAGTTTACTGAAAAACTGGAGCAGGTGCATACTGCATACCAAAAAATGGCCAAGAGGTGCCAGATGATGGAACGAGAGATGGAGAATATATCCAAAGACAAACAAGAGCTCCAGGAGAAGTTTGCTGAAAAATCCAGGCAGAAGAGGAAACTAGATGAGATGTATGATCAATTGAGGAATGAGCATGAATCACTAAAACGGTCGGCCATCCAGCCTGTGAGCAATTTTTATCCAAGAAACGAGCCCGATTTGTTCTCAAACCCCGTTAGTTTGATGGATAACAGAGAACCCATGAGGAAAGGACCAAGAGAGGAAATATGGCCAACACGACAAAATAGCGGGAACTCTGGTCACTTCGACATCTCCGTTGGGTCACCGGCAAAACAAGCTGCTCCGATGGCAATGGAAGCTGGAAATAGAAGAGGTGGAGCTCACAATGCGTTTGGAAGTGGAGCTGGCAACCCCTCCATGACTCTGCGCAACTTGATTCTGTCCCCAATCAAACGACCTCAGCTCTCACGTCGCCCTCAAATGTTCACGTAA 882 44.56 MKCNACWRELEGRAISTTCGHLLCTEDASKILSNDGACPICDQVLSKSLMKPVDINPNDEWVNMAMAGINPQILMKSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVMQEKFTEKLEQVHTAYQKMAKRCQMMEREMENISKDKQELQEKFAEKSRQKRKLDEMYDQLRNEHESLKRSAIQPVSNFYPRNEPDLFSNPVSLMDNREPMRKGPREEIWPTRQNSGNSGHFDISVGSPAKQAAPMAMEAGNRRGGAHNAFGSGAGNPSMTLRNLILSPIKRPQLSRRPQMFT 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3360989 3362689 - CmaCh04G006570.1 Cma04g00657 291738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00657 293 MobiDBLite consensus disorder prediction 200 231 - -
Cma04g00657 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 53 IPR013083 -
Cma04g00657 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG 1 293 - -
Cma04g00657 293 Pfam zinc-RING finger domain 2 43 IPR001841 -
Cma04g00657 293 SUPERFAMILY RING/U-box 2 50 - -
Cma04g00657 293 Coils Coil 126 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00657 K10639 CCNB1IP1, HEI10; E3 ubiquitin-protein ligase CCNP1IP1 [EC:2.3.2.27] - csv:101209267 562.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00427 Cma-Chr16:2131766 Cma04g00657 Cma-Chr4:3360989 7.60E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g31 . . . . . . Bma10g00462 . . Cmo04g00706 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1022 . . . . . . . . . . . . . . . . Cma04g00657 . . . . Cpe01g00594 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003426 1 5 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 9 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00657 Cma_Chr04 FPKM 5.952381 5.589202 10.665913 11.071225 12.453138 13.552493 12.123741 8.365415 9.983159 10.198643