Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00659 ATGAAGATTCAATGCAATGTCTGCGAAATGGCTGAAGCCACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAACATTCATGCGGCCAACAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAGATGCGACATCTGCCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTATTTTGCAGAAAGTGTGATGTTGCAATACACACAGCAAATACTTGCGTAACAGGTCATCAACGCTTTCTGCTCACTGGTGTGAAGGTCGCACTCGAGCCAACCGACCCTGTTCCCTGTTCTTCCATAGCTAATTCACATTCTAGAGAGATATCAACCAAGACGAAAGTTAGACCACCGTCTGATAAGGAATTCTCGATGCCTTCGTCTGGTGAACTCAGCAGAAGCCTGTCTGTTCAAGGCGGATCTGATGACTTCATGACAAATAGAACATTGCTTACTGGAGATTCTGCTTCTGGTGGCTTTTCACAATGGCAAATAGATGAACTCATTAATCTGACTGGATTCAATCAGACTTGTGGGTTTATGGATAACGGATCATCCAAGCTTGGATGCTTTTCTCCATATATACACTATACAACCTTCAAGATTGATAGGGACTGGAGAGAGACAGAACTAATTCTTAGGCACGACACGCCGGTCATGGGCGAGTTCTTGCATGTTATGATATTATCCTATCCTCATAGATTAACTGCAAAAAAGTGGACTGATTGGAGGCTGATAGTGGAAAGCTTGGGGAATCCGACTCATCACCAAGTTTGA 825 45.82 MKIQCNVCEMAEATVLCCADEAALCWACDENIHAANKLASKHQRVPLSGSSSQMPRCDICQEASGYIFCLEDRALFCRKCDVAIHTANTCVTGHQRFLLTGVKVALEPTDPVPCSSIANSHSREISTKTKVRPPSDKEFSMPSSGELSRSLSVQGGSDDFMTNRTLLTGDSASGGFSQWQIDELINLTGFNQTCGFMDNGSSKLGCFSPYIHYTTFKIDRDWRETELILRHDTPVMGEFLHVMILSYPHRLTAKKWTDWRLIVESLGNPTHHQV 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3365505 3367975 + CmaCh04G006590.1 Cma04g00659 291740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00659 274 Gene3D Classic Zinc Finger 1 93 - -
Cma04g00659 274 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 203 - -
Cma04g00659 274 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cma04g00659 274 CDD Bbox1_BBX-like 57 99 - -
Cma04g00659 274 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 203 - -
Cma04g00659 274 MobiDBLite consensus disorder prediction 117 150 - -
Cma04g00659 274 CDD Bbox1_BBX-like 5 47 - -
Cma04g00659 274 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma04g00659 274 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cma04g00659 274 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma04g00659 274 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00659 - - - bhj:120091143 369.392
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00659 Cma16g00426 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00659 Cma-Chr4:3365505 Cma17g00607 Cma-Chr17:5142890 4.82E-46 dispersed
Cma16g00606 Cma-Chr16:3132335 Cma04g00659 Cma-Chr4:3365505 1.39E-26 dispersed
Cma16g00426 Cma-Chr16:2125173 Cma04g00659 Cma-Chr4:3365505 8.62E-125 wgd
Cma16g00426 Cma-Chr16:2125173 Cma04g00659 Cma-Chr4:3365505 8.62E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g32 . . . . Bpe09g00270 . Bma10g00461 Bma13g00920 Cmo16g00458 Cmo04g00707 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1023 . . . . . . Blo10g00720 . . . . . . . . . Cma04g00659 Cma16g00426 . . Cpe14g00359 Cpe01g00595 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00377 CCT 6 333 C2C2-CO-like Transcription Factor Family AT5G15850 50.4 2.5e-45 180.3
Cma12g00377 CCT 4 333 C2C2-CO-like Transcription Factor Family AT3G02380 50.6 1.5e-42 171.0
Cma05g00338 CCT 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 5.3e-83 305.4
Cma12g00377 CCT 1 333 C2C2-CO-like Transcription Factor Family AT5G24930 59.2 1.9e-77 287.0
Cma11g00415 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 2.5e-56 216.9
Cma10g00418 CCT,CST 75 429 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 1.5e-53 207.6
Cma11g00415 CCT,CST 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.3 3.2e-64 243.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 55.5 3.2e-91 332.8
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 8.1e-87 318.2
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT3G07650 54.4 8.1e-87 318.2
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.9 1.1e-83 307.8
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT5G48250 56.0 1.8e-86 317.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 2.4e-86 316.6
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 3.4e-85 312.8
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 6.7e-81 298.5
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT5G48250 56.0 1.8e-86 317.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 2.4e-86 316.6
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 3.4e-85 312.8
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 6.7e-81 298.5
Cma11g01083 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 56.7 4.4e-52 202.6
Cma19g00687 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 52.9 1.7e-48 190.7
Cma04g00659 CST 1 203 C2C2-CO-like Transcription Factor Family AT1G78600 54.7 3.7e-56 216.1
Cma16g00606 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 61.4 7.6e-56 214.2
Cma07g00442 CST 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 4.1e-49 191.8
Cma03g00703 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 1.0e-47 187.2
Cma16g00606 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 64.0 1.5e-57 219.9
Cma07g00442 CST 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 66.9 1.3e-50 196.8
Cma03g00703 CST 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 65.0 2.8e-48 189.1
Cma11g01083 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 58.4 1.5e-52 203.8
Cma19g00687 CCT,ECH 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 55.6 6.7e-50 194.9
Cma12g00429 CCT,CST,ECH 26 231 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.5e-44 176.4
Cma05g00283 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.2 4.2e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34788 PF00643 zf-B_box 6.10E-06 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00659 Cma_Chr04 FPKM 2.56048 2.571605 12.910267 13.219324 10.099998 7.749247 9.226255 5.80233 5.478047 5.668193