Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00659 ATGAAGATTCAATGCAATGTCTGCGAAATGGCTGAAGCCACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAACATTCATGCGGCCAACAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAGATGCGACATCTGCCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTATTTTGCAGAAAGTGTGATGTTGCAATACACACAGCAAATACTTGCGTAACAGGTCATCAACGCTTTCTGCTCACTGGTGTGAAGGTCGCACTCGAGCCAACCGACCCTGTTCCCTGTTCTTCCATAGCTAATTCACATTCTAGAGAGATATCAACCAAGACGAAAGTTAGACCACCGTCTGATAAGGAATTCTCGATGCCTTCGTCTGGTGAACTCAGCAGAAGCCTGTCTGTTCAAGGCGGATCTGATGACTTCATGACAAATAGAACATTGCTTACTGGAGATTCTGCTTCTGGTGGCTTTTCACAATGGCAAATAGATGAACTCATTAATCTGACTGGATTCAATCAGACTTGTGGGTTTATGGATAACGGATCATCCAAGCTTGGATGCTTTTCTCCATATATACACTATACAACCTTCAAGATTGATAGGGACTGGAGAGAGACAGAACTAATTCTTAGGCACGACACGCCGGTCATGGGCGAGTTCTTGCATGTTATGATATTATCCTATCCTCATAGATTAACTGCAAAAAAGTGGACTGATTGGAGGCTGATAGTGGAAAGCTTGGGGAATCCGACTCATCACCAAGTTTGA 825 45.82 MKIQCNVCEMAEATVLCCADEAALCWACDENIHAANKLASKHQRVPLSGSSSQMPRCDICQEASGYIFCLEDRALFCRKCDVAIHTANTCVTGHQRFLLTGVKVALEPTDPVPCSSIANSHSREISTKTKVRPPSDKEFSMPSSGELSRSLSVQGGSDDFMTNRTLLTGDSASGGFSQWQIDELINLTGFNQTCGFMDNGSSKLGCFSPYIHYTTFKIDRDWRETELILRHDTPVMGEFLHVMILSYPHRLTAKKWTDWRLIVESLGNPTHHQV 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3365505 3367975 + CmaCh04G006590.1 Cma04g00659 291740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00659 274 Gene3D Classic Zinc Finger 1 93 - -
Cma04g00659 274 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 203 - -
Cma04g00659 274 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cma04g00659 274 CDD Bbox1_BBX-like 57 99 - -
Cma04g00659 274 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 203 - -
Cma04g00659 274 MobiDBLite consensus disorder prediction 117 150 - -
Cma04g00659 274 CDD Bbox1_BBX-like 5 47 - -
Cma04g00659 274 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma04g00659 274 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cma04g00659 274 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma04g00659 274 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00659 Cma16g00426 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00659 Cma-Chr4:3365505 Cma17g00607 Cma-Chr17:5142890 4.82E-46 dispersed
Cma16g00606 Cma-Chr16:3132335 Cma04g00659 Cma-Chr4:3365505 1.39E-26 dispersed
Cma16g00426 Cma-Chr16:2125173 Cma04g00659 Cma-Chr4:3365505 8.62E-125 wgd
Cma16g00426 Cma-Chr16:2125173 Cma04g00659 Cma-Chr4:3365505 8.62E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34788 PF00643 zf-B_box 6.10E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00659 - - bhj:120091143 369.392